Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K1T74_RS01445 Genome accession   NZ_CP080462
Coordinates   306337..306855 (+) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301337..311855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS01425 - 301554..304031 (-) 2478 WP_032470274.1 penicillin-binding protein 1A -
  K1T74_RS01430 pilM 304174..305190 (+) 1017 WP_220105968.1 type IV pilus assembly protein PilM Machinery gene
  K1T74_RS01435 pilN 305180..305764 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  K1T74_RS01440 pilO 305757..306347 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  K1T74_RS01445 pilP 306337..306855 (+) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  K1T74_RS01450 pilQ 306881..308596 (+) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  K1T74_RS01455 aroK 308783..309307 (+) 525 WP_000818616.1 shikimate kinase AroK -
  K1T74_RS01460 aroB 309335..310420 (+) 1086 WP_000439805.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=593039 K1T74_RS01445 WP_000792032.1 306337..306855(+) (pilP) [Vibrio cholerae strain ICDC-VC702]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=593039 K1T74_RS01445 WP_000792032.1 306337..306855(+) (pilP) [Vibrio cholerae strain ICDC-VC702]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTACTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564