Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K1T74_RS01230 Genome accession   NZ_CP080462
Coordinates   261478..262485 (+) Length   335 a.a.
NCBI ID   WP_032473898.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 256478..267485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS01210 metJ 256482..256799 (+) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -
  K1T74_RS01215 - 256910..258187 (-) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  K1T74_RS01220 rpmE 258495..258713 (-) 219 WP_000643446.1 50S ribosomal protein L31 -
  K1T74_RS01225 priA 258968..261172 (+) 2205 WP_220105962.1 primosomal protein N' -
  K1T74_RS01230 cytR 261478..262485 (+) 1008 WP_032473898.1 DNA-binding transcriptional regulator CytR Regulator
  K1T74_RS01235 - 262657..263208 (+) 552 WP_001891621.1 SPOR domain-containing protein -
  K1T74_RS01240 hslV 263345..263902 (+) 558 WP_000208247.1 ATP-dependent protease subunit HslV -
  K1T74_RS01245 hslU 263968..265299 (+) 1332 WP_001293366.1 HslU--HslV peptidase ATPase subunit -
  K1T74_RS01250 - 265403..266320 (+) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  K1T74_RS01255 rraA 266395..266910 (+) 516 WP_000456236.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37004.57 Da        Isoelectric Point: 7.0759

>NTDB_id=593035 K1T74_RS01230 WP_032473898.1 261478..262485(+) (cytR) [Vibrio cholerae strain ICDC-VC702]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPSA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=593035 K1T74_RS01230 WP_032473898.1 261478..262485(+) (cytR) [Vibrio cholerae strain ICDC-VC702]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AACAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGTCCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

99.701

100

0.997
  cytR Vibrio parahaemolyticus RIMD 2210633

90.419

99.701

0.901