Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   Sta3580_RS12410 Genome accession   NZ_CP080458
Coordinates   2519095..2519811 (+) Length   238 a.a.
NCBI ID   WP_015900794.1    Uniprot ID   B9DMK5
Organism   Staphylococcus carnosus strain KCTC 3580     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514095..2524811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta3580_RS12390 (Sta3580_12350) - 2515351..2516151 (+) 801 WP_015900789.1 carbon-nitrogen family hydrolase -
  Sta3580_RS12395 (Sta3580_12360) - 2517042..2517617 (+) 576 WP_015900790.1 accessory gene regulator AgrB -
  Sta3580_RS12400 (Sta3580_12365) - 2517626..2517763 (+) 138 WP_015900791.1 cyclic lactone autoinducer peptide -
  Sta3580_RS12405 (Sta3580_12370) - 2517795..2519090 (+) 1296 Protein_2403 GHKL domain-containing protein -
  Sta3580_RS12410 (Sta3580_12375) agrA 2519095..2519811 (+) 717 WP_015900794.1 LytTR family DNA-binding domain-containing protein Regulator
  Sta3580_RS12415 (Sta3580_12380) - 2519858..2521330 (-) 1473 WP_015900795.1 GH32 C-terminal domain-containing protein -
  Sta3580_RS12420 (Sta3580_12385) - 2521542..2522627 (+) 1086 WP_015900796.1 YeeE/YedE family protein -
  Sta3580_RS12425 (Sta3580_12390) - 2522654..2522878 (+) 225 WP_015900797.1 sulfurtransferase TusA family protein -
  Sta3580_RS12430 (Sta3580_12395) - 2522928..2523572 (-) 645 WP_015900798.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27830.62 Da        Isoelectric Point: 4.6988

>NTDB_id=593022 Sta3580_RS12410 WP_015900794.1 2519095..2519811(+) (agrA) [Staphylococcus carnosus strain KCTC 3580]
MKIIICEDDQQQRAHIEEIINNYTMIEEKPLEIALSTNDPYEVIEYAKNTNDICCYFLDIQLDADINGIKLGSELRKFDT
VGNIVFVTSYSELTYLTFVYKVAAMDFIFKDDPSEMKSRIIDCIETALTRLQLLSKESNVETIELKRGSNSVYVNYDDVM
FFESSTKSHRLIAHLDNRQIEFYGSLKELSNIDERFFRCHNSFVINLNNIEEVISKEREIHFKNGEHCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=593022 Sta3580_RS12410 WP_015900794.1 2519095..2519811(+) (agrA) [Staphylococcus carnosus strain KCTC 3580]
ATGAAAATTATTATTTGTGAAGACGACCAGCAACAACGCGCACATATCGAAGAAATTATCAATAACTATACAATGATTGA
AGAAAAGCCATTAGAAATTGCTCTCTCAACTAATGATCCATATGAAGTAATTGAATACGCTAAAAATACAAATGACATTT
GTTGTTACTTCTTAGATATTCAACTTGACGCAGATATAAATGGGATTAAACTCGGTAGTGAGTTACGTAAATTTGATACG
GTTGGGAATATTGTTTTTGTGACAAGTTATAGCGAATTGACTTACTTAACTTTTGTTTATAAAGTAGCAGCAATGGATTT
TATCTTTAAAGATGATCCTAGCGAAATGAAATCACGGATTATTGATTGCATTGAAACAGCACTTACACGTTTGCAGCTAT
TATCTAAAGAAAGCAACGTTGAAACAATCGAACTTAAAAGAGGCAGTAATTCTGTCTATGTTAATTACGATGATGTAATG
TTTTTCGAATCATCCACTAAATCTCATAGATTGATTGCACATTTAGATAATCGTCAAATTGAGTTTTATGGAAGTTTGAA
AGAACTCAGTAATATTGATGAACGCTTCTTCCGTTGTCACAACAGCTTTGTAATCAACCTCAATAATATCGAAGAAGTGA
TTTCAAAAGAACGTGAAATTCACTTTAAAAACGGCGAACATTGCTATGTCTCTGTCCGTAACCTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DMK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

78.151

100

0.782