Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   Sta0113_RS10935 Genome accession   NZ_CP080457
Coordinates   2217055..2217771 (+) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain WiKim0113     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212055..2222771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta0113_RS10910 (Sta0113_10830) - 2212778..2213401 (+) 624 WP_061815724.1 nitroreductase family protein -
  Sta0113_RS10915 (Sta0113_10835) - 2213532..2214317 (+) 786 WP_145437043.1 carbon-nitrogen family hydrolase -
  Sta0113_RS10920 (Sta0113_10840) - 2215019..2215585 (+) 567 WP_049379609.1 accessory gene regulator AgrB -
  Sta0113_RS10925 (Sta0113_10845) - 2215588..2215728 (+) 141 WP_017175278.1 cyclic lactone autoinducer peptide -
  Sta0113_RS10930 (Sta0113_10850) - 2215753..2217042 (+) 1290 WP_070653903.1 GHKL domain-containing protein -
  Sta0113_RS10935 (Sta0113_10855) agrA 2217055..2217771 (+) 717 WP_002455088.1 LytTR family DNA-binding domain-containing protein Regulator
  Sta0113_RS10940 (Sta0113_10860) - 2217822..2218781 (-) 960 WP_248855251.1 carbohydrate kinase -
  Sta0113_RS10945 (Sta0113_10865) - 2218782..2220269 (-) 1488 WP_017175281.1 sucrose-6-phosphate hydrolase -
  Sta0113_RS10950 (Sta0113_10870) - 2220525..2221769 (-) 1245 WP_017175282.1 ammonium transporter -
  Sta0113_RS10955 (Sta0113_10875) - 2221879..2222103 (-) 225 WP_002448268.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=592991 Sta0113_RS10935 WP_002455088.1 2217055..2217771(+) (agrA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=592991 Sta0113_RS10935 WP_002455088.1 2217055..2217771(+) (agrA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAATAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTAGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTTAAAACGCGAATAATAGATTGTATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGTAATGTTGAGACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCGCATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGCCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAACGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874