Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Sta0113_RS09055 Genome accession   NZ_CP080457
Coordinates   1858538..1859512 (-) Length   324 a.a.
NCBI ID   WP_248855185.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain WiKim0113     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1853538..1864512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta0113_RS09025 (Sta0113_08960) gcvT 1854098..1855189 (-) 1092 WP_017176243.1 glycine cleavage system aminomethyltransferase GcvT -
  Sta0113_RS09030 (Sta0113_08965) - 1855384..1855893 (-) 510 WP_017176242.1 shikimate kinase -
  Sta0113_RS09035 (Sta0113_08970) - 1856058..1856555 (-) 498 WP_017176240.1 competence protein ComG -
  Sta0113_RS09040 (Sta0113_08975) comGD 1856747..1857181 (-) 435 WP_049382010.1 competence type IV pilus minor pilin ComGD -
  Sta0113_RS09045 (Sta0113_08980) comGC 1857171..1857482 (-) 312 WP_017176238.1 competence type IV pilus major pilin ComGC Machinery gene
  Sta0113_RS09050 (Sta0113_08985) comGB 1857502..1858560 (-) 1059 WP_048681721.1 competence type IV pilus assembly protein ComGB -
  Sta0113_RS09055 (Sta0113_08990) comGA 1858538..1859512 (-) 975 WP_248855185.1 competence type IV pilus ATPase ComGA Machinery gene
  Sta0113_RS09060 (Sta0113_08995) - 1859563..1860189 (-) 627 WP_017176235.1 MBL fold metallo-hydrolase -
  Sta0113_RS09065 (Sta0113_09000) - 1860191..1860514 (-) 324 WP_017176234.1 MTH1187 family thiamine-binding protein -
  Sta0113_RS09070 (Sta0113_09005) - 1860514..1861500 (-) 987 WP_002449785.1 ROK family glucokinase -
  Sta0113_RS09075 (Sta0113_09010) - 1861497..1861700 (-) 204 WP_017176233.1 YqgQ family protein -
  Sta0113_RS09080 (Sta0113_09015) - 1861684..1863141 (-) 1458 WP_017176232.1 rhomboid family intramembrane serine protease -
  Sta0113_RS09085 (Sta0113_09020) - 1863141..1863692 (-) 552 WP_145436808.1 5-formyltetrahydrofolate cyclo-ligase -
  Sta0113_RS09090 (Sta0113_09025) rpmG 1863903..1864052 (-) 150 WP_002449881.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36879.88 Da        Isoelectric Point: 8.6474

>NTDB_id=592980 Sta0113_RS09055 WP_248855185.1 1858538..1859512(-) (comGA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
MKLLFQEIINKAISKNASDVHFIPSEDKVHIKFRVNDILETYEMFSNDIYEKLLIYMKFKANLDVSTHQIAQSGRYTYHA
KSIFYLRISTLPLSLGIESCVIRLIPQYFTSKREYKDFNDFKSLMNKKQGLILLTGPTGSGKSTLMYQLVLYAFQELNLN
VITIENPVEQLLKGITQVSVNHKAGIDYVSSFKAILRCNPDVILIGEIRDAEVAKCVIQASLSGHLVLTTMHSSNCKGAI
LRLLEMGISVQEISQAINVISNQRLVTTTSNQRKLVCESITNNQIQYFFEHNHTLPKTFNNLKEKLLSLSKEGLICEDVV
EKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=592980 Sta0113_RS09055 WP_248855185.1 1858538..1859512(-) (comGA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
TTGAAATTATTATTTCAAGAAATAATTAATAAAGCAATTTCAAAAAATGCAAGTGACGTACACTTTATTCCTTCAGAGGA
TAAAGTACATATTAAATTCAGAGTGAATGATATATTAGAGACATATGAAATGTTTAGTAATGACATTTATGAAAAATTAT
TAATTTATATGAAATTCAAAGCAAATTTAGATGTATCAACACATCAAATAGCTCAAAGTGGTAGATATACTTATCATGCT
AAATCAATATTTTATTTAAGAATTTCTACTTTACCTTTGTCATTAGGAATAGAAAGTTGTGTTATTAGACTTATCCCTCA
ATATTTCACTTCTAAAAGAGAGTATAAGGACTTTAATGACTTTAAATCTCTAATGAATAAAAAGCAAGGTCTCATTTTAC
TTACTGGTCCAACGGGTTCAGGTAAAAGTACTTTGATGTATCAATTAGTACTCTATGCTTTTCAGGAATTAAATTTAAAT
GTTATTACAATTGAAAATCCTGTTGAACAATTATTAAAAGGCATAACACAAGTGTCAGTAAATCATAAAGCCGGTATAGA
TTATGTTAGTTCATTTAAAGCAATATTAAGATGTAATCCAGATGTTATTTTAATTGGTGAAATTAGAGATGCTGAAGTGG
CAAAATGTGTTATTCAAGCAAGTTTAAGTGGTCATTTAGTGTTAACTACTATGCATTCAAGCAATTGTAAGGGCGCAATA
CTCAGATTGTTAGAGATGGGGATTAGTGTTCAAGAAATTTCACAAGCAATAAATGTTATTTCAAATCAAAGATTAGTTAC
AACTACTTCAAATCAAAGAAAGCTTGTTTGTGAGTCTATTACAAATAATCAAATTCAATATTTTTTTGAACATAACCATA
CGCTTCCTAAGACATTTAATAATTTAAAAGAAAAATTGTTATCGCTATCGAAAGAAGGTCTTATATGTGAAGATGTGGTT
GAAAAATATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

68.827

100

0.688
  comGA Staphylococcus aureus N315

68.827

100

0.688