Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FBMFHHBO_RS17610 Genome accession   NZ_CP080452
Coordinates   3668799..3669617 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain MRSN 56     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663799..3674617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBMFHHBO_RS17595 (FBMFHHBO_17595) pilE 3664018..3664443 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  FBMFHHBO_RS17600 (FBMFHHBO_17600) pilY2 3664440..3664922 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  FBMFHHBO_RS17605 (FBMFHHBO_17605) pilY1 3664933..3668787 (-) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  FBMFHHBO_RS17610 (FBMFHHBO_17610) pilX 3668799..3669617 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FBMFHHBO_RS17615 (FBMFHHBO_17615) pilW 3669614..3670615 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  FBMFHHBO_RS17620 (FBMFHHBO_17620) pilV 3670616..3671176 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FBMFHHBO_RS17625 (FBMFHHBO_17625) fimU 3671170..3671643 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FBMFHHBO_RS17630 (FBMFHHBO_17630) ispH 3671813..3672763 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FBMFHHBO_RS17635 (FBMFHHBO_17635) gmk 3672886..3673515 (+) 630 WP_000015937.1 guanylate kinase -
  FBMFHHBO_RS17640 (FBMFHHBO_17640) rpoZ 3673588..3673866 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FBMFHHBO_RS17645 (FBMFHHBO_17645) - 3673905..3674035 (+) 131 Protein_3466 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=592948 FBMFHHBO_RS17610 WP_000149374.1 3668799..3669617(-) (pilX) [Acinetobacter baumannii strain MRSN 56]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=592948 FBMFHHBO_RS17610 WP_000149374.1 3668799..3669617(-) (pilX) [Acinetobacter baumannii strain MRSN 56]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993