Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K0U91_RS09215 Genome accession   NZ_CP080443
Coordinates   1965379..1966728 (-) Length   449 a.a.
NCBI ID   WP_220180580.1    Uniprot ID   -
Organism   Chryseobacterium sp. LJ668     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1960379..1971728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0U91_RS09185 (K0U91_09185) - 1960482..1961057 (-) 576 WP_220180584.1 HupE/UreJ family protein -
  K0U91_RS09190 (K0U91_09190) - 1961217..1961717 (+) 501 WP_219970413.1 DUF6702 family protein -
  K0U91_RS09195 (K0U91_09195) - 1961722..1962315 (-) 594 WP_219970414.1 ACP phosphodiesterase -
  K0U91_RS09200 (K0U91_09200) - 1962312..1963019 (-) 708 WP_220180583.1 VanW family protein -
  K0U91_RS09205 (K0U91_09205) - 1963016..1963687 (-) 672 WP_220180582.1 class I SAM-dependent methyltransferase -
  K0U91_RS09210 (K0U91_09210) - 1963755..1965293 (-) 1539 WP_220180581.1 M12 family metallo-peptidase -
  K0U91_RS09215 (K0U91_09215) radA 1965379..1966728 (-) 1350 WP_220180580.1 DNA repair protein RadA Machinery gene
  K0U91_RS09220 (K0U91_09220) - 1967412..1969025 (+) 1614 WP_219970419.1 CTP synthase -
  K0U91_RS09225 (K0U91_09225) yidC 1969198..1970994 (+) 1797 WP_220180579.1 membrane protein insertase YidC -
  K0U91_RS09230 (K0U91_09230) - 1971103..1971687 (-) 585 WP_219970421.1 ribonuclease HII -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49766.38 Da        Isoelectric Point: 6.5102

>NTDB_id=592907 K0U91_RS09215 WP_220180580.1 1965379..1966728(-) (radA) [Chryseobacterium sp. LJ668]
MAKLRTAYFCQNCGSQYSQWMGQCKNCGEWNTLVEEIVEKTPQKSISSSKIKQTVINIIEVEAVEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLADIKNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=592907 K0U91_RS09215 WP_220180580.1 1965379..1966728(-) (radA) [Chryseobacterium sp. LJ668]
ATGGCAAAACTGAGAACAGCATATTTCTGTCAAAACTGCGGATCGCAATATTCACAATGGATGGGACAGTGTAAAAACTG
CGGCGAATGGAATACTTTGGTGGAAGAAATTGTAGAAAAAACACCTCAAAAAAGTATATCATCTTCAAAAATCAAACAAA
CCGTCATCAACATCATTGAAGTTGAAGCCGTAGAAGAACCAAGAATAAAAACTCCATCCGACGAACTCAACCGTGTTTTG
GGTGGAGGAATTGTATTGGGTTCGGTCACGTTAATCGGCGGAGAACCCGGAATCGGAAAATCTACCCTACTCCTTCAGCT
TGCTTTGAAGATGAAAAAGAAAGTTTTTTATGTTTCCGGTGAGGAAAGTGCATCACAGATCAAAATGAGAGCCGACCGTT
TGGCAGATATAAAAAACCCAAACTGTTTTCTGTACACCGAAACTTCTTTGGAAAAGATTCTTCATGAAGCTAAAAAACTG
GAGCCGGATTTTGTTATCATCGATTCTATTCAGACTTTGCAGTCACAGCTGATTGAAAGTTCACCAGGAACCGTTTCCCA
GATCCGTGAATGTTCTAATGAAATTATTAAATATGCCAAAGAAAACAATGTTCCTGTTTTCCTGGTTGGTCATATCACAA
AAGACGGCCAGATTGCAGGACCAAAGGTTCTGGAACATATGGTCGATGTGGTTCTCAATTTTGACGGCGACAGAAATCAC
CTTTTCAGATTGTTGCGAGCCAATAAAAACCGTTTTGGATCGACCGCAGAAATTGGAATTTATGAAATGGTTTCACAAGG
TTTAAAAGAAATAAAAAATCCTTCAGAAATTTTAATCACTAAAAAATTCGAAGAACTTTCCGGAAATTCTGTGGCAGTGA
CCTTAGAAGGAAACAGACCGATGCTTTTGGAAATACAGGCTTTGGTAAGCACTGCCGTTTACGGAACTCCGCAAAGATCC
AGCACCGGTTTCGATTCTAAAAGGCTCAATATGTTGTTGGCAGTTTTAGAAAAGAGGGCAGGCTTTCAACTGGGTGCGAA
AGATGTTTTCCTGAATATTACCGGTGGAATAAAGACCGACGATCCGGCATTAGATTTAGCAGTTGTCGCATCTATTCTCT
CGTCCAATGAAGATATTGCCATCTCTGAACATTTCTGTTTTGCCGGCGAAATTGGTCTGAGTGGCGAAATTCGTCCTGTC
GCACAAGTGGAACAAAGAATTACTGAGGCAGAAAAATTGGGTTATGAAAAGATTTTTGTTTCCAATTTAAATAAAATACC
TAAGAGAAAATTCGGGATCAAAATTGAGGAAGTAAGCAAGGTAGAAGATTTTCACGAGAGGTTATTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.497
  radA Streptococcus pneumoniae Rx1

48.035

100

0.49
  radA Streptococcus pneumoniae R6

48.035

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.035

100

0.49
  radA Streptococcus pneumoniae D39

48.035

100

0.49
  radA Streptococcus mitis NCTC 12261

48.026

100

0.488
  radA Streptococcus mitis SK321

50.118

94.655

0.474