Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M2I96_RS02765 Genome accession   NZ_CP096956
Coordinates   602144..604141 (+) Length   665 a.a.
NCBI ID   WP_019725750.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY11173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597144..609141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I96_RS02745 (M2I96_02745) - 597382..598125 (-) 744 WP_015649726.1 metallophosphoesterase -
  M2I96_RS02750 (M2I96_02750) - 598330..599634 (+) 1305 WP_015649725.1 ferric reductase-like transmembrane domain-containing protein -
  M2I96_RS02755 (M2I96_02755) metK 599690..600880 (-) 1191 WP_003084948.1 methionine adenosyltransferase -
  M2I96_RS02760 (M2I96_02760) - 600896..601897 (-) 1002 WP_003113231.1 metalloregulator ArsR/SmtB family transcription factor -
  M2I96_RS02765 (M2I96_02765) recP/tkt 602144..604141 (+) 1998 WP_019725750.1 transketolase Machinery gene
  M2I96_RS02770 (M2I96_02770) - 604141..605205 (+) 1065 WP_003101600.1 hypothetical protein -
  M2I96_RS02775 (M2I96_02775) otnI 605186..605983 (-) 798 WP_019725751.1 2-oxo-tetronate isomerase -
  M2I96_RS02780 (M2I96_02780) epd 606198..607259 (+) 1062 WP_003084958.1 erythrose-4-phosphate dehydrogenase -
  M2I96_RS02785 (M2I96_02785) - 607265..608428 (+) 1164 WP_003084960.1 phosphoglycerate kinase -
  M2I96_RS02790 (M2I96_02790) - 608501..608701 (+) 201 WP_003084961.1 hypothetical protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72234.34 Da        Isoelectric Point: 4.9735

>NTDB_id=592668 M2I96_RS02765 WP_019725750.1 602144..604141(+) (recP/tkt) [Pseudomonas aeruginosa strain NY11173]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYMQHNPSNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLGIEDLKNFRQLNSRTPGHPEYGYTAGVETTTGPLGQGIANAVGMALAEKVLAAQFNRDGHVVVDHYTYAFLGDGCMME
GISHEVASLAGTLRLNKLIAFYDDNGISIDGEVHGWFTDDTPKRFEAYGWQVIRNVDGHDADEIKTAIDTARKSDQPTLI
CCKTVIGFGSPNKQGKEECHGAPLGADEIAATRAALGWEHAPFEIPAQIYAEWDAKETGAAQEAEWNKRFAAYQAAHPEL
AAELLRRLKGELPADFAEKAAAYVADVANKGETIASRKASQNALNAFGPLLPELLGGSADLAGSNLTLWKGCKGVSADDA
AGNYVFYGVREFGMSAIMNGVALHGGFIPYGATFLIFMEYARNAVRMSALMKQRVLYVFTHDSIGLGEDGPTHQPIEQLA
SLRLTPNLDTWRPADAVESAVAWKHAIERADGPSALVFSRQNLPHQARDVAQVADIARGGYVLKDCEGEPELILIATGSE
VGLAVQAYDKLSEQGRKVRVVSMPCTSVYEQQDESYKQSVLPVEVGARIAIEAAHADYWYKYVGLDGRIIGMTSFGESAP
APALFEHFGFTLDNVLAVAEELLED

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=592668 M2I96_RS02765 WP_019725750.1 602144..604141(+) (recP/tkt) [Pseudomonas aeruginosa strain NY11173]
ATGCCCAGCCGTCGTGAGCGAGCCAATGCCATCCGTGCACTGAGCATGGATGCCGTGCAGAAAGCCAACAGCGGCCACCC
GGGCGCCCCGATGGGCATGGCCGATATCGCCGAGGTCCTCTGGCGCGACTACATGCAGCACAACCCGAGCAACCCGCAGT
GGGCCAACCGCGACCGCTTCGTGCTGTCCAACGGCCACGGCTCGATGCTGATCTACTCCCTGCTGCACCTCACCGGGTAC
GACCTCGGCATCGAGGACCTGAAGAACTTCCGCCAGCTCAACTCGCGCACCCCGGGCCACCCGGAGTACGGCTACACCGC
CGGCGTCGAGACCACCACCGGTCCGCTCGGCCAGGGCATCGCCAATGCGGTGGGCATGGCGCTGGCGGAGAAGGTCCTGG
CCGCCCAGTTCAACCGCGACGGCCACGTGGTGGTCGACCACTACACCTACGCCTTCCTCGGCGACGGCTGCATGATGGAA
GGCATTTCCCATGAGGTCGCCTCGCTGGCCGGCACCCTGCGCCTGAACAAGCTGATCGCCTTCTACGACGACAACGGCAT
TTCCATCGACGGCGAGGTCCACGGCTGGTTCACCGACGACACCCCGAAGCGCTTCGAGGCCTATGGCTGGCAAGTGATCC
GCAACGTCGACGGGCATGACGCCGACGAGATCAAGACCGCCATCGATACCGCGCGCAAGAGCGACCAGCCGACCCTGATC
TGCTGCAAGACCGTGATCGGTTTCGGCTCGCCGAACAAGCAGGGCAAGGAAGAGTGCCACGGCGCGCCGCTGGGCGCCGA
CGAGATCGCCGCGACCCGCGCCGCGCTGGGCTGGGAGCACGCTCCGTTCGAGATCCCGGCGCAGATCTACGCCGAGTGGG
ACGCCAAGGAAACCGGCGCCGCCCAGGAAGCCGAGTGGAACAAGCGTTTCGCCGCCTACCAGGCTGCCCATCCGGAACTG
GCCGCCGAATTGCTGCGCCGCCTGAAGGGCGAGCTGCCGGCCGACTTCGCCGAGAAGGCCGCGGCCTACGTCGCCGATGT
TGCCAACAAGGGTGAGACCATCGCCAGCCGCAAGGCCAGCCAGAACGCGCTGAACGCCTTCGGCCCGCTGCTGCCGGAGC
TGCTCGGCGGTTCCGCCGACCTGGCCGGCTCCAACCTGACCTTGTGGAAGGGCTGCAAGGGCGTCAGCGCCGACGACGCC
GCCGGCAACTACGTGTTCTACGGCGTGCGCGAATTCGGCATGAGCGCGATCATGAATGGCGTCGCCCTGCACGGCGGTTT
CATTCCCTACGGTGCGACCTTCCTGATCTTCATGGAATACGCGCGCAACGCCGTGCGCATGTCCGCACTGATGAAGCAGC
GCGTGCTCTACGTGTTCACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGATCGAACAACTGGCC
AGCCTGCGCCTGACCCCGAACCTGGACACCTGGCGCCCGGCCGACGCGGTCGAGTCGGCGGTGGCCTGGAAGCATGCCAT
CGAGCGTGCCGACGGTCCGTCCGCGCTGGTCTTCTCCCGCCAGAACCTGCCGCACCAGGCGCGCGACGTCGCCCAGGTGG
CCGACATCGCCCGCGGCGGCTACGTGCTGAAGGACTGCGAAGGCGAGCCGGAACTGATCCTGATCGCCACCGGTTCGGAA
GTCGGCCTGGCCGTGCAGGCCTACGACAAGCTCAGCGAGCAGGGCCGCAAGGTCCGCGTGGTATCGATGCCATGCACCAG
CGTCTACGAGCAGCAGGACGAGTCCTACAAGCAGTCCGTGCTGCCGGTGGAAGTCGGCGCGCGCATCGCCATCGAGGCCG
CCCATGCCGACTACTGGTACAAGTACGTCGGTCTCGACGGGCGCATCATCGGCATGACCAGCTTCGGCGAGTCGGCGCCG
GCCCCGGCGCTGTTCGAGCACTTCGGCTTCACCCTGGACAACGTCCTGGCGGTGGCCGAGGAGCTGCTGGAAGACTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.485

99.248

0.481