Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   K0T28_RS24040 Genome accession   NZ_CP080405
Coordinates   5199327..5199884 (+) Length   185 a.a.
NCBI ID   WP_023119823.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PES_P749     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5194327..5204884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0T28_RS24020 (K0T28_24015) pilR 5195603..5196940 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  K0T28_RS24025 (K0T28_24020) thiO 5196986..5198080 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  K0T28_RS24030 (K0T28_24025) - 5198215..5198724 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  K0T28_RS24035 (K0T28_24030) - 5198830..5199336 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  K0T28_RS24040 (K0T28_24035) pilV 5199327..5199884 (+) 558 WP_023119823.1 type 4a pilus minor pilin PilV Machinery gene
  K0T28_RS24045 (K0T28_24040) pilW 5199881..5200705 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  K0T28_RS24050 (K0T28_24045) pilX 5200702..5201289 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  K0T28_RS24055 (K0T28_24050) pilY1 5201301..5204792 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20088.18 Da        Isoelectric Point: 8.2255

>NTDB_id=592567 K0T28_RS24040 WP_023119823.1 5199327..5199884(+) (pilV) [Pseudomonas aeruginosa strain PES_P749]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGNNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=592567 K0T28_RS24040 WP_023119823.1 5199327..5199884(+) (pilV) [Pseudomonas aeruginosa strain PES_P749]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAACAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989