Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   M2I94_RS32225 Genome accession   NZ_CP096950
Coordinates   6840370..6840879 (-) Length   169 a.a.
NCBI ID   WP_202070540.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5532     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6835370..6845879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I94_RS32205 (M2I94_32105) - 6836809..6837636 (-) 828 WP_202070536.1 DUF932 domain-containing protein -
  M2I94_RS32210 (M2I94_32110) - 6838254..6838625 (+) 372 WP_202070537.1 TIR domain-containing protein -
  M2I94_RS32215 (M2I94_32115) - 6838644..6839618 (+) 975 WP_202070538.1 caspase family protein -
  M2I94_RS32220 (M2I94_32120) - 6839640..6840119 (+) 480 WP_202070539.1 toll/interleukin-1 receptor domain-containing protein -
  M2I94_RS32225 (M2I94_32125) radC 6840370..6840879 (-) 510 WP_202070540.1 DNA repair protein RadC Machinery gene
  M2I94_RS32230 (M2I94_32130) - 6841214..6842287 (-) 1074 Protein_6361 PDDEXK nuclease domain-containing protein -
  M2I94_RS32235 (M2I94_32135) - 6842284..6843486 (-) 1203 WP_202070541.1 site-specific integrase -
  M2I94_RS32240 (M2I94_32140) tonB1 6843713..6844726 (-) 1014 WP_202070542.1 energy transducer TonB1 -
  M2I94_RS32245 (M2I94_32145) - 6844819..6845787 (-) 969 WP_010793613.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18711.58 Da        Isoelectric Point: 7.4344

>NTDB_id=592553 M2I94_RS32225 WP_202070540.1 6840370..6840879(-) (radC) [Pseudomonas aeruginosa strain NY5532]
MSQLSLSSFDSVLMVRSARGRYQPASVDQILEAARVVIDQKMPRGESFTSPMAVKEYLSTKLACLEHEVFAVLFLDTQHR
LIKYSELFRGTIDSASVYPREVLKEALRLNAAAVIISHNHPSGNPEPSVADKSLTKRLREALAMVDVRVLDHIIVCGTST
TSFAEHGLL

Nucleotide


Download         Length: 510 bp        

>NTDB_id=592553 M2I94_RS32225 WP_202070540.1 6840370..6840879(-) (radC) [Pseudomonas aeruginosa strain NY5532]
ATGTCGCAACTTTCTCTTTCTTCCTTCGATTCCGTCCTGATGGTTCGTAGTGCGCGTGGGCGCTACCAGCCGGCCTCTGT
CGATCAGATCCTTGAAGCAGCTCGCGTGGTCATCGACCAGAAAATGCCGCGCGGCGAATCCTTTACATCACCGATGGCGG
TAAAGGAGTATCTGAGCACCAAGCTGGCGTGCCTGGAGCATGAAGTCTTCGCAGTGTTGTTCCTTGATACGCAGCATAGG
CTGATCAAGTACAGCGAGCTTTTCCGGGGCACTATCGACAGTGCATCGGTGTACCCGCGTGAAGTGCTCAAGGAGGCACT
GCGGCTCAATGCAGCGGCAGTCATCATTTCTCATAACCACCCGAGCGGGAATCCCGAGCCTAGCGTAGCCGATAAGTCGC
TGACGAAGCGACTTCGGGAGGCGCTGGCGATGGTGGACGTGCGCGTGCTGGATCACATCATTGTTTGCGGCACGAGCACA
ACATCATTTGCAGAGCATGGCCTACTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48

88.757

0.426