Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PP4_RS19585 Genome accession   NC_021505
Coordinates   4428811..4429446 (-) Length   211 a.a.
NCBI ID   WP_016500907.1    Uniprot ID   A0AAP1T5P6
Organism   Pseudomonas putida NBRC 14164     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4423811..4434446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP4_RS19555 (PP4_38840) murB 4424908..4425927 (-) 1020 WP_016500902.1 UDP-N-acetylmuramate dehydrogenase -
  PP4_RS19560 (PP4_38850) - 4425924..4426388 (-) 465 WP_016500903.1 low molecular weight protein-tyrosine-phosphatase -
  PP4_RS19565 (PP4_38860) kdsB 4426388..4427152 (-) 765 WP_016500904.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PP4_RS19570 (PP4_38870) - 4427149..4427334 (-) 186 WP_003247142.1 Trm112 family protein -
  PP4_RS19575 (PP4_38880) lpxK 4427379..4428380 (-) 1002 WP_016500905.1 tetraacyldisaccharide 4'-kinase -
  PP4_RS19580 (PP4_38890) - 4428380..4428814 (-) 435 WP_016500906.1 biopolymer transporter ExbD -
  PP4_RS19585 (PP4_38900) exbB 4428811..4429446 (-) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PP4_RS19590 (PP4_38910) comA 4429551..4431764 (-) 2214 WP_041167829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PP4_RS28200 (PP4_38920) - 4431907..4432545 (+) 639 WP_016500909.1 DUF2062 domain-containing protein -
  PP4_RS19595 (PP4_38930) - 4432429..4433208 (-) 780 WP_016500910.1 ABC transporter permease -
  PP4_RS19600 (PP4_38940) - 4433205..4434137 (-) 933 WP_016500911.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22874.14 Da        Isoelectric Point: 7.3616

>NTDB_id=59246 PP4_RS19585 WP_016500907.1 4428811..4429446(-) (exbB) [Pseudomonas putida NBRC 14164]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMNANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=59246 PP4_RS19585 WP_016500907.1 4428811..4429446(-) (exbB) [Pseudomonas putida NBRC 14164]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGAATGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCAATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment