Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KY494_RS26980 Genome accession   NZ_CP080377
Coordinates   6027582..6028958 (+) Length   458 a.a.
NCBI ID   WP_219888884.1    Uniprot ID   -
Organism   Janthinobacterium sp. PAMC25594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6022582..6033958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY494_RS26960 (KY494_26960) - 6023046..6023903 (+) 858 WP_219888880.1 uracil-DNA glycosylase family protein -
  KY494_RS26965 (KY494_26965) - 6023896..6024834 (+) 939 WP_258194497.1 DUF1853 family protein -
  KY494_RS26970 (KY494_26970) lplT 6024895..6026157 (-) 1263 WP_219133506.1 lysophospholipid transporter LplT -
  KY494_RS26975 (KY494_26975) alr 6026404..6027507 (+) 1104 WP_219888883.1 alanine racemase -
  KY494_RS26980 (KY494_26980) radA 6027582..6028958 (+) 1377 WP_219888884.1 DNA repair protein RadA Machinery gene
  KY494_RS26985 (KY494_26985) - 6029143..6029412 (+) 270 WP_141170088.1 PilZ domain-containing protein -
  KY494_RS26990 (KY494_26990) fliD 6029644..6031029 (+) 1386 WP_219888886.1 flagellar filament capping protein FliD -
  KY494_RS26995 (KY494_26995) - 6031026..6031826 (-) 801 WP_219136822.1 helix-turn-helix domain-containing protein -
  KY494_RS27000 (KY494_27000) - 6031927..6033177 (+) 1251 WP_219136821.1 MFS transporter -
  KY494_RS27005 (KY494_27005) rraA 6033210..6033704 (+) 495 WP_219136820.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48960.60 Da        Isoelectric Point: 7.7366

>NTDB_id=592398 KY494_RS26980 WP_219888884.1 6027582..6028958(+) (radA) [Janthinobacterium sp. PAMC25594]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
GTLADLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQAIKGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=592398 KY494_RS26980 WP_219888884.1 6027582..6028958(+) (radA) [Janthinobacterium sp. PAMC25594]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGTAATAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAACACCATGGTGGAAACCCTGCCCGAAACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGACGATATCGACGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCCAACATGTCGCACCACAAGCGCGTGCTGTATGTCAGCGGCGAAGAGTCCGGCGCACAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAATTGCAGGCCGAGATCCAGCTGGAAAAAATCCTC
GGCACCCTGGCCGACCTGAAGCCGGAAGTGGTGGTGATTGATTCGATCCAGACCGTGTATTCGGACGCGCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCGCAACTGACGCGCGCGGCCAAGCAGACGGGCGTGACCATCATCC
TGGTGGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGCCCCCGCGTGCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAATGAGCTGGGCGTGTT
TGCCATGACGGAAAAGGGCTTGAAGGGCGTGTCGAACCCGTCCGCCCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCG
GTTCCTGCGTGATGGTGACGCAGGAAGGCACGCGCCCGCTGCTGGTGGAAATCCAGGCCCTGGTCGATACCAGCCACTTG
CCGAATGCGCGCCGCCTGTCGGTGGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCATGCGGG
CATCGCCGCCTTCGACCAGGACGTGTTCATCAATGCCGTCGGCGGCGTCAAAATTACGGAACCGGCGGCCGACCTGGCCG
TGTTGCTGGCGATTAACTCGTCGATGCGCAACAAACCCTTGCCGCGGGGACTCGTGGTGTTTGGCGAAGTGGGCCTGGCC
GGCGAAATCCGCCCTGCGCCACGGGGCCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCCAACCTGCCCAAGCAAGCGATCAAGGGTCTCAAGGTCATCGGCGTCGAGCGCATCGACGAAGCGTTCAACAAAT
TGCGCGATCTGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.571

99.345

0.483
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus mitis SK321

47.712

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.807

99.563

0.476
  radA Streptococcus pneumoniae R6

47.807

99.563

0.476
  radA Streptococcus pneumoniae Rx1

47.807

99.563

0.476
  radA Streptococcus pneumoniae D39

47.807

99.563

0.476