Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KY494_RS15475 Genome accession   NZ_CP080377
Coordinates   3446044..3447522 (-) Length   492 a.a.
NCBI ID   WP_219136147.1    Uniprot ID   -
Organism   Janthinobacterium sp. PAMC25594     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3441044..3452522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY494_RS15455 (KY494_15455) - 3441923..3442930 (-) 1008 WP_375143357.1 IS110 family transposase -
  KY494_RS15460 (KY494_15460) rapZ 3443369..3444232 (+) 864 WP_071079719.1 RNase adapter RapZ -
  KY494_RS15465 (KY494_15465) - 3444233..3445318 (-) 1086 WP_219887431.1 3-hydroxyisobutyryl-CoA hydrolase -
  KY494_RS15470 (KY494_15470) hpf 3445615..3445974 (-) 360 WP_219136148.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KY494_RS15475 (KY494_15475) rpoN/rpoN1 3446044..3447522 (-) 1479 WP_219136147.1 RNA polymerase factor sigma-54 Machinery gene
  KY494_RS15480 (KY494_15480) lptB 3447527..3448282 (-) 756 WP_099760888.1 LPS export ABC transporter ATP-binding protein -
  KY494_RS15485 (KY494_15485) lptA 3448282..3448845 (-) 564 WP_219136146.1 lipopolysaccharide transport periplasmic protein LptA -
  KY494_RS15490 (KY494_15490) lptC 3448871..3449482 (-) 612 WP_258194263.1 LPS export ABC transporter periplasmic protein LptC -
  KY494_RS15495 (KY494_15495) - 3449528..3450061 (-) 534 WP_219136145.1 HAD family hydrolase -
  KY494_RS15500 (KY494_15500) - 3450061..3451095 (-) 1035 WP_375143358.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54569.23 Da        Isoelectric Point: 5.1075

>NTDB_id=592388 KY494_RS15475 WP_219136147.1 3446044..3447522(-) (rpoN/rpoN1) [Janthinobacterium sp. PAMC25594]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPAAPAEAETFDGEAGDSPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHVAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDEEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=592388 KY494_RS15475 WP_219136147.1 3446044..3447522(-) (rpoN/rpoN1) [Janthinobacterium sp. PAMC25594]
ATGAAACAATCATTGCAGCTGCGCACCTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGCTGCA
ATTGTCTACCCTGGAATTGCACCAGGAACTCGAGCAACTGCTGACGGACAATCCCTTGCTCGAGCGCCTCGACGATCCGC
TCGACCGTTCGCTGCGCCTGCTGTCCGACGGGGCCCTGAGTTCCACGGCCGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAGGCGCCCGCAGCGCCAGCCGAAGCGGAAACCTTTGACGGCGAGGCGGGTGACAGCCCGGCCGCCGCGGACGG
CGGCGACAGCGACTGGAGCGAGGCGAGCCGGGGCAAGGCGCCCGACGACGAAGATTCGCGTCCGCAACTGGAGGCCCATC
ACTGCACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGTGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCACTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGCACGGCCTTGTCCCTGCTGCAAAGTTTCGATCCGCCGGGCGTGGGCGCGCGCAATGCAT
CCGAATGCCTGGCGTTGCAAATCAAGCGCTTGCCGCACGTCGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGAGGAAGACTTGCGTGA
AGCGCAGACGGTGATTCGCCAGTGTAATCCGCATCCGGGCGCCGTGTTTGCCTCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTCACCCTGAACAATGACGTCATGCCGCGCCTGCGCGTCAACGCC
ATGTACGCCAACCTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGTGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTCGACACGATCCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.913

100

0.624