Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KY494_RS00325 Genome accession   NZ_CP080377
Coordinates   86652..89075 (+) Length   807 a.a.
NCBI ID   WP_219889425.1    Uniprot ID   -
Organism   Janthinobacterium sp. PAMC25594     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 81652..94075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY494_RS00310 (KY494_00310) - 83050..83523 (+) 474 WP_219133875.1 T6SS effector amidase Tae4 family protein -
  KY494_RS00315 (KY494_00315) - 83540..85525 (-) 1986 WP_219889423.1 helicase-related protein -
  KY494_RS00320 (KY494_00320) - 85613..86446 (-) 834 WP_219889424.1 class I SAM-dependent methyltransferase -
  KY494_RS00325 (KY494_00325) comA 86652..89075 (+) 2424 WP_219889425.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KY494_RS00330 (KY494_00330) - 89115..89879 (+) 765 WP_219889426.1 hypothetical protein -
  KY494_RS00335 (KY494_00335) - 90060..90983 (-) 924 WP_219133870.1 LysR family transcriptional regulator -
  KY494_RS00340 (KY494_00340) - 91135..91896 (+) 762 WP_219889427.1 TSUP family transporter -
  KY494_RS00345 (KY494_00345) - 91918..92613 (+) 696 WP_219889428.1 HAD family phosphatase -
  KY494_RS00350 (KY494_00350) - 92672..93472 (+) 801 WP_219889429.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 87212.67 Da        Isoelectric Point: 10.1063

>NTDB_id=592380 KY494_RS00325 WP_219889425.1 86652..89075(+) (comA) [Janthinobacterium sp. PAMC25594]
MRTLILGFAAGAASLQMQTSLPAHAGVLLWLIAGLGLTVSLALRRHARWRCVVALAAGVGLGFYWAAWLAQAAMAPQLAL
ADEGQDIIVTGTVASLPYRFEQGVRFNFAVEKAVGAQVPPLIALSWYAGFRDEVTNEVGDVQPGERWRLTVRLPRPHGNA
NPMGFDYEAWLLEQGVRATGYVRPQPRADTPNMRLAAFVPAFGNVVEASRAVLRARILRSLENKQYAGVIVALVVGDQRA
IPQSDWQVFNRTGVSHLISISGLHITMIAGMFALGAGALWRRSFFTERQLPLLLPAQKVAALAGALAAFAYVLLAGFGVP
AQRTLYMLLVVALALWLGRITSIGHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTTAPLPESAGRWRRLR
AAVALGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLVVTPLSLAGSLLPAPLCDGLLLLAHAIVQMLAQVL
DWLGARRFAVWTAPAPPWWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPPGQMWITAFDVGQGMAVLVET
HGHRLLYDTGPAYSLDSDGASRVIVPYLRARGIARLDGVIISHSDLDHAGGAISLLENIDVGWLASSLFDGHPAVEARRQ
ARRPYLHCMAGQRWTWEGVRFAMLHPLPASHTDISLKPNARSCAVKITAGKHAILLAGDIEAAQEAQLLGRSADGELAAD
VLLAPHHGSGTSSTSAFLSAVHPALAIFQVGHRNRYKHPKAQVYARYGEMGIARLRTDVEGAVVMEFGDAVEVTRYRASR
PRYWHGR

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=592380 KY494_RS00325 WP_219889425.1 86652..89075(+) (comA) [Janthinobacterium sp. PAMC25594]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCTTCGCTGCAGATGCAGACCAGCTTGCCGGCCCATGCTGGCGT
GCTGCTGTGGCTGATCGCTGGCTTGGGGTTGACGGTTAGTCTGGCGCTGCGTCGCCACGCGCGCTGGCGCTGCGTTGTCG
CGCTTGCCGCCGGCGTGGGACTGGGCTTTTATTGGGCGGCCTGGCTGGCCCAGGCCGCCATGGCGCCGCAACTGGCGCTG
GCCGATGAAGGGCAGGACATCATCGTGACAGGCACGGTGGCCAGCTTGCCGTACCGTTTCGAGCAGGGCGTGCGTTTTAA
CTTTGCCGTGGAAAAGGCGGTTGGCGCGCAGGTACCGCCCCTGATCGCGCTGTCCTGGTACGCGGGGTTTCGCGATGAAG
TGACGAACGAGGTGGGCGACGTGCAGCCGGGCGAACGCTGGCGTTTGACGGTGCGGCTGCCGCGTCCGCACGGCAACGCG
AATCCCATGGGTTTCGATTACGAGGCGTGGCTGCTGGAGCAGGGTGTGCGCGCCACCGGCTATGTGCGGCCGCAGCCGCG
CGCCGATACGCCGAACATGCGCCTGGCGGCCTTCGTGCCTGCTTTCGGCAACGTGGTGGAAGCGAGCCGCGCAGTGCTGC
GCGCGCGCATCCTGCGCAGCCTGGAGAATAAACAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGCGATCAGCGCGCC
ATTCCCCAGTCGGACTGGCAAGTATTCAACCGCACGGGCGTGAGCCACCTGATTTCAATTTCCGGCTTGCATATTACGAT
GATCGCGGGAATGTTCGCCTTGGGCGCAGGCGCGCTGTGGCGGCGCTCGTTTTTCACGGAGCGGCAACTGCCTTTGCTGC
TGCCGGCGCAAAAAGTGGCGGCCCTGGCCGGTGCGCTGGCGGCATTTGCCTATGTGCTGCTGGCGGGCTTCGGCGTGCCG
GCGCAGCGCACTTTATATATGTTGCTGGTGGTGGCGCTGGCCTTGTGGCTGGGGCGCATCACCAGCATCGGCCATATCCT
GTGCCTGGCGTTGGGCGTGGTCGTGCTGCTCGATCCGTGGGCCGTGCTGTGGCCTGGTTTCTGGCTGTCGTTCGGCGCCG
TCGCCACCATGCTGTACGCGACGGCAGGCCGCACCACGGCGCCCTTGCCGGAGAGCGCCGGCCGCTGGCGCCGTTTGCGC
GCGGCCGTGGCGCTCGGTGCGCACACGCAGTATGTGGTGACGGTGGGGCTGGTACCGTTGACGATGCTGCTGTTTTCGCA
AGTGTCGCTGGTCAGCCCTGTGGCCAATGCGCTGGCCATTCCCGTCATCAGCCTGGTCGTCACGCCCTTGTCCCTGGCGG
GCAGCCTGCTGCCCGCGCCCTTGTGCGACGGGCTGTTGCTGCTGGCACACGCCATCGTGCAGATGCTGGCGCAGGTACTG
GACTGGCTCGGTGCGCGCCGTTTTGCCGTGTGGACGGCGCCCGCGCCGCCATGGTGGAGTTTTTGCTGGGCATTGTTTGG
CACGGCCTGGCTGCTGGCGCCACGCGGATGGCCGCATCGCTGGGCGGGCATGCTGGGCTGGCTGCCGCTGCTGACGGCCT
TGCCGTCCAGCCCGCCACCTGGCCAGATGTGGATCACGGCCTTTGATGTGGGACAAGGCATGGCCGTGCTGGTGGAAACG
CATGGACACCGCTTGTTGTACGACACGGGGCCCGCCTACAGCCTCGATTCCGATGGCGCCAGCCGCGTCATCGTGCCCTA
TTTGCGCGCGCGCGGCATAGCCAGGCTGGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCGGGCGGCGCCATTT
CCCTGCTGGAAAATATAGACGTGGGCTGGCTGGCCTCGTCGCTGTTCGACGGCCACCCGGCCGTCGAGGCCCGGCGGCAA
GCCCGGCGTCCGTATCTGCACTGCATGGCGGGCCAGCGCTGGACTTGGGAAGGCGTGCGCTTCGCCATGCTGCACCCACT
GCCCGCCAGCCACACGGACATTTCCCTGAAACCGAACGCCCGCAGCTGCGCGGTGAAAATCACGGCGGGCAAGCATGCAA
TCTTGCTGGCTGGCGACATCGAAGCGGCGCAGGAAGCGCAATTGCTTGGCCGCTCGGCAGACGGTGAGCTGGCCGCCGAT
GTGCTGCTGGCGCCCCATCATGGCAGCGGCACGTCTTCCACGTCAGCATTCTTGAGCGCCGTCCATCCGGCCCTGGCGAT
TTTCCAGGTTGGGCACAGGAATCGCTATAAACATCCGAAGGCGCAGGTCTACGCGCGCTATGGCGAGATGGGGATTGCGC
GGCTGCGCACGGATGTGGAAGGCGCGGTGGTAATGGAGTTTGGGGACGCTGTTGAGGTGACCCGGTATCGGGCCAGCCGG
CCACGTTACTGGCATGGGCGATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(233-515)

Domain of unknown function (DUF4131) (DUF4131)

(26-184)

Metallo-beta-lactamase superfamily (Lactamase_B)

(550-741)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.784

100

0.494