Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H650_RS22350 Genome accession   NC_021500
Coordinates   4797951..4798571 (+) Length   206 a.a.
NCBI ID   WP_020457272.1    Uniprot ID   -
Organism   Enterobacter sp. R4-368     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4792951..4803571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H650_RS22330 (H650_23565) - 4793334..4795094 (-) 1761 WP_020457268.1 Lon protease family protein -
  H650_RS22335 (H650_23570) matP 4795277..4795729 (+) 453 WP_020457269.1 macrodomain Ter protein MatP -
  H650_RS22340 (H650_23575) ompA 4795806..4796855 (-) 1050 WP_020457270.1 porin OmpA -
  H650_RS22345 (H650_23580) sulA 4797223..4797732 (-) 510 WP_020457271.1 SOS-induced cell division inhibitor SulA -
  H650_RS22350 (H650_23585) sxy/tfoX 4797951..4798571 (+) 621 WP_020457272.1 TfoX/Sxy family DNA transformation protein Regulator
  H650_RS22355 (H650_23590) yccS 4798565..4800694 (-) 2130 WP_044489607.1 YccS family putative transporter -
  H650_RS22360 (H650_23595) - 4800712..4801158 (-) 447 WP_020457274.1 YccF domain-containing protein -
  H650_RS22365 (H650_23600) helD 4801281..4803335 (+) 2055 WP_020457275.1 DNA helicase IV -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23552.23 Da        Isoelectric Point: 9.9602

>NTDB_id=59237 H650_RS22350 WP_020457272.1 4797951..4798571(+) (sxy/tfoX) [Enterobacter sp. R4-368]
MEDLSYQRIYQSREYLMPLGTICHRAHFGGYSLSVDKTVFAMVAEGELYLRACDESAQYTVTQDAPLLVFNKRGRQVSLN
YYFVSESVWRDRSLLLQLSALSLDAARRDKDRRSARKRLRDLPNLTFQLEAQLHEAGVLDAHTLRMLGAKVCWLRLRKSN
KHLSAKVLLALEGAIVGLHEAALPAPRRRELMEWFNGVIKKGASPY

Nucleotide


Download         Length: 621 bp        

>NTDB_id=59237 H650_RS22350 WP_020457272.1 4797951..4798571(+) (sxy/tfoX) [Enterobacter sp. R4-368]
ATGGAAGACCTATCTTATCAACGGATATATCAGTCACGCGAATACCTCATGCCTCTCGGCACAATTTGTCACCGCGCTCA
TTTTGGTGGTTACAGCTTGTCAGTGGATAAAACTGTTTTCGCGATGGTTGCAGAAGGGGAACTTTACCTTCGCGCTTGCG
ACGAGAGTGCGCAATATACGGTTACGCAAGATGCCCCTTTACTGGTATTCAACAAACGTGGGCGTCAGGTTTCGTTAAAT
TACTACTTCGTTAGCGAGAGTGTGTGGCGCGATCGTTCGTTACTTCTGCAACTTTCGGCTCTGTCACTTGATGCTGCGCG
GCGTGATAAAGATCGGCGCAGTGCCAGAAAACGGTTACGCGATCTGCCTAACCTTACTTTTCAACTTGAAGCTCAACTTC
ATGAAGCGGGAGTACTGGATGCACATACACTGCGAATGCTCGGGGCAAAAGTTTGTTGGCTTAGATTGAGAAAATCAAAC
AAGCATCTGAGCGCGAAAGTGCTTCTTGCACTCGAGGGCGCAATTGTTGGGCTTCACGAAGCGGCGTTACCGGCGCCGCG
ACGCCGGGAACTGATGGAGTGGTTTAACGGCGTAATCAAGAAAGGAGCGAGTCCTTACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.585

99.515

0.563

Multiple sequence alignment