Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | K0H55_RS14285 | Genome accession | NZ_CP080370 |
| Coordinates | 2951881..2952510 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain PK5086 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2942709..2980285 | 2951881..2952510 | within | 0 |
Gene organization within MGE regions
Location: 2942709..2980285
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0H55_RS14235 (K0H55_14235) | tusE | 2942980..2943309 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| K0H55_RS14240 (K0H55_14240) | yccX | 2943306..2943584 (-) | 279 | WP_000048250.1 | acylphosphatase | - |
| K0H55_RS14245 (K0H55_14245) | rlmI | 2943679..2944869 (+) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| K0H55_RS14250 (K0H55_14250) | hspQ | 2944927..2945244 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| K0H55_RS14255 (K0H55_14255) | yccU | 2945289..2945702 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| K0H55_RS14260 (K0H55_14260) | yccT | 2945875..2946537 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| K0H55_RS14265 (K0H55_14265) | mgsA | 2946633..2947091 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| K0H55_RS14270 (K0H55_14270) | helD | 2947123..2949177 (-) | 2055 | WP_000420536.1 | DNA helicase IV | - |
| K0H55_RS14275 (K0H55_14275) | yccF | 2949300..2949746 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| K0H55_RS14280 (K0H55_14280) | yccS | 2949756..2951918 (+) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| K0H55_RS14285 (K0H55_14285) | sxy/tfoX | 2951881..2952510 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| K0H55_RS14290 (K0H55_14290) | sulA | 2952729..2953238 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| K0H55_RS14295 (K0H55_14295) | ompA | 2953595..2954647 (+) | 1053 | WP_001361736.1 | porin OmpA | - |
| K0H55_RS14300 (K0H55_14300) | matP | 2954723..2955175 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| K0H55_RS14305 (K0H55_14305) | ycbZ | 2955361..2957121 (+) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| K0H55_RS14310 (K0H55_14310) | fabA | 2957190..2957708 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| K0H55_RS14315 (K0H55_14315) | rmf | 2957778..2957945 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| K0H55_RS14320 (K0H55_14320) | pqiC | 2958201..2958764 (-) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| K0H55_RS14325 (K0H55_14325) | pqiB | 2958761..2960401 (-) | 1641 | WP_000445535.1 | intermembrane transport protein PqiB | - |
| K0H55_RS14330 (K0H55_14330) | pqiA | 2960406..2961659 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| K0H55_RS14335 (K0H55_14335) | uup | 2961789..2963696 (-) | 1908 | WP_000053069.1 | ABC transporter ATP-binding protein | - |
| K0H55_RS14340 (K0H55_14340) | rlmKL | 2963708..2965816 (-) | 2109 | WP_001086520.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| K0H55_RS14345 (K0H55_14345) | ycbX | 2966060..2967169 (+) | 1110 | WP_000224270.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| K0H55_RS14350 (K0H55_14350) | zapC | 2967166..2967708 (-) | 543 | WP_001372781.1 | cell division protein ZapC | - |
| K0H55_RS14355 (K0H55_14355) | pyrD | 2967882..2968892 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| K0H55_RS14360 (K0H55_14360) | ycbF | 2969003..2969740 (-) | 738 | WP_001111449.1 | fimbrial chaperone | - |
| K0H55_RS14365 (K0H55_14365) | ycbV | 2969706..2970221 (-) | 516 | WP_000919480.1 | fimbrial protein | - |
| K0H55_RS14370 (K0H55_14370) | ycbU | 2970229..2970771 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| K0H55_RS14375 (K0H55_14375) | elfG | 2970783..2971853 (-) | 1071 | WP_060621153.1 | fimbrial protein | - |
| K0H55_RS14380 (K0H55_14380) | elfC | 2971844..2974444 (-) | 2601 | WP_000286313.1 | fimbrial biogenesis usher protein | - |
| K0H55_RS14385 (K0H55_14385) | - | 2974469..2975053 (-) | 585 | Protein_2830 | molecular chaperone | - |
| K0H55_RS14390 (K0H55_14390) | - | 2975120..2976282 (+) | 1163 | WP_085947771.1 | IS3-like element IS3 family transposase | - |
| K0H55_RS14395 (K0H55_14395) | - | 2976312..2976431 (-) | 120 | Protein_2832 | fimbrial protein | - |
| K0H55_RS14400 (K0H55_14400) | - | 2976514..2977056 (-) | 543 | WP_000750284.1 | fimbrial protein | - |
| K0H55_RS14405 (K0H55_14405) | ssuE | 2977412..2977987 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| K0H55_RS14410 (K0H55_14410) | ssuA | 2977980..2978939 (+) | 960 | WP_001244343.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| K0H55_RS14415 (K0H55_14415) | ssuD | 2978936..2980081 (+) | 1146 | WP_000055996.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=592363 K0H55_RS14285 WP_000839153.1 2951881..2952510(-) (sxy/tfoX) [Escherichia coli strain PK5086]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=592363 K0H55_RS14285 WP_000839153.1 2951881..2952510(-) (sxy/tfoX) [Escherichia coli strain PK5086]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |