Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M2I92_RS19590 Genome accession   NZ_CP096945
Coordinates   4090984..4091580 (-) Length   198 a.a.
NCBI ID   WP_034039736.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5525     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4085984..4096580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I92_RS19565 (M2I92_19500) - 4086330..4086527 (-) 198 Protein_3871 TetR family transcriptional regulator -
  M2I92_RS19570 (M2I92_19505) - 4086620..4088203 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  M2I92_RS19575 (M2I92_19510) - 4088200..4089087 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  M2I92_RS19580 (M2I92_19515) - 4089161..4089700 (+) 540 WP_003103931.1 CbrC family protein -
  M2I92_RS19585 (M2I92_19520) - 4089713..4090861 (-) 1149 WP_034039738.1 acyl-CoA dehydrogenase family protein -
  M2I92_RS19590 (M2I92_19525) recR 4090984..4091580 (-) 597 WP_034039736.1 recombination mediator RecR Machinery gene
  M2I92_RS19595 (M2I92_19530) - 4091659..4091985 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  M2I92_RS19600 (M2I92_19535) dnaX 4092031..4094088 (-) 2058 WP_042858178.1 DNA polymerase III subunit gamma/tau -
  M2I92_RS19605 (M2I92_19540) - 4094125..4094991 (+) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  M2I92_RS19615 (M2I92_19550) - 4095245..4095622 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21143.40 Da        Isoelectric Point: 6.0063

>NTDB_id=592299 M2I92_RS19590 WP_034039736.1 4090984..4091580(-) (recR) [Pseudomonas aeruginosa strain NY5525]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFGEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=592299 M2I92_RS19590 WP_034039736.1 4090984..4091580(-) (recR) [Pseudomonas aeruginosa strain NY5525]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGTGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCGGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48