Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KZR06_RS11260 Genome accession   NZ_CP080336
Coordinates   2382350..2383714 (-) Length   454 a.a.
NCBI ID   WP_259908686.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain L1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2377350..2388714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR06_RS11240 (KZR06_11165) - 2377640..2378911 (-) 1272 WP_016388388.1 MucBP domain-containing protein -
  KZR06_RS11245 (KZR06_11170) - 2379229..2380005 (-) 777 WP_003591638.1 ABC transporter permease -
  KZR06_RS11250 (KZR06_11175) - 2380023..2380910 (-) 888 WP_016388387.1 ABC transporter ATP-binding protein -
  KZR06_RS11255 (KZR06_11180) - 2381213..2382328 (-) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  KZR06_RS11260 (KZR06_11185) radA 2382350..2383714 (-) 1365 WP_259908686.1 DNA repair protein RadA Machinery gene
  KZR06_RS11265 (KZR06_11190) - 2383731..2384273 (-) 543 WP_016388386.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  KZR06_RS11270 (KZR06_11195) - 2384494..2384784 (+) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  KZR06_RS11275 (KZR06_11200) - 2384900..2385277 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  KZR06_RS11280 (KZR06_11205) - 2385522..2386841 (+) 1320 WP_003605926.1 C1 family peptidase -
  KZR06_RS11285 (KZR06_11210) - 2387074..2388420 (+) 1347 WP_259908691.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49174.52 Da        Isoelectric Point: 7.4216

>NTDB_id=592237 KZR06_RS11260 WP_259908686.1 2382350..2383714(-) (radA) [Lacticaseibacillus paracasei strain L1]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKIKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKFGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=592237 KZR06_RS11260 WP_259908686.1 2382350..2383714(-) (radA) [Lacticaseibacillus paracasei strain L1]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGACGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACCGCAGCCGGAAGCAAGA
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTATCAGGGCAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGCGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGAGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTTGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTTGGTTTCAAACGGATTTTTGTACCACGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.991

99.78

0.678
  radA Streptococcus pneumoniae D39

67.991

99.78

0.678
  radA Streptococcus pneumoniae R6

67.991

99.78

0.678
  radA Streptococcus pneumoniae TIGR4

67.991

99.78

0.678
  radA Streptococcus mitis NCTC 12261

67.991

99.78

0.678
  radA Streptococcus mitis SK321

67.77

99.78

0.676
  radA Bacillus subtilis subsp. subtilis str. 168

64.317

100

0.643