Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M2I88_RS02055 Genome accession   NZ_CP096941
Coordinates   454535..455899 (+) Length   454 a.a.
NCBI ID   WP_031691549.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5523     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449535..460899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I88_RS02035 (M2I88_02035) - 450372..450938 (-) 567 WP_003084491.1 hypothetical protein -
  M2I88_RS02040 (M2I88_02040) rsmD 450941..451537 (-) 597 WP_003084492.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M2I88_RS02045 (M2I88_02045) - 451537..453024 (-) 1488 WP_003084496.1 pitrilysin family protein -
  M2I88_RS02050 (M2I88_02050) - 453017..454414 (-) 1398 WP_003084498.1 pitrilysin family protein -
  M2I88_RS02055 (M2I88_02055) pilA 454535..455899 (+) 1365 WP_031691549.1 signal recognition particle-docking protein FtsY Machinery gene
  M2I88_RS02060 (M2I88_02060) ftsE 455896..456567 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  M2I88_RS02065 (M2I88_02065) ftsX 456567..457574 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  M2I88_RS02070 (M2I88_02070) rpoH 457688..458542 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  M2I88_RS02075 (M2I88_02075) - 458607..459212 (+) 606 WP_003084511.1 hypothetical protein -
  M2I88_RS02080 (M2I88_02080) mtgA 459217..459948 (-) 732 WP_003084512.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  M2I88_RS02085 (M2I88_02085) - 459985..460362 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  M2I88_RS02090 (M2I88_02090) thiS 460465..460665 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48266.69 Da        Isoelectric Point: 4.5525

>NTDB_id=592052 M2I88_RS02055 WP_031691549.1 454535..455899(+) (pilA) [Pseudomonas aeruginosa strain NY5523]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPTDQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAEP
PAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTS
ASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPL
QVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIF
DAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLAL
TKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=592052 M2I88_RS02055 WP_031691549.1 454535..455899(+) (pilA) [Pseudomonas aeruginosa strain NY5523]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTACCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCCGAGCCG
CCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCC
CGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGG
CCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGC
GCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGAC
GCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGG
AGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTG
CAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAA
GCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGC
AGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACTGGCGCCGACTCCGCCTCGGTGATCTTC
GACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAA
CCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGC
TCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTG
ACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGG
TGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACG
CATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(164-229)

SRP54-type protein, GTPase domain (SRP54)

(249-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.26

96.476

0.456