Detailed information NTG0592013

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KZ686_RS12485
• Genome accession: NZ_CP080293
• Coordinates: 2790462..2791835 (-)
• Length: 457 a.a.
• NCBI ID: WP_149319052.1
• Uniprot ID: -
• Organism: Cupriavidus cauae strain PHS1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2785462..2796835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZ686_RS12470 (KZ686_12440)	-	2787196..2789037 (-)	1842	WP_150083698.1	ABC transporter ATP-binding protein	-
KZ686_RS12475 (KZ686_12445)	-	2789083..2789568 (-)	486	WP_149319051.1	disulfide bond formation protein B	-
KZ686_RS12480 (KZ686_12450)	-	2789904..2790341 (+)	438	WP_317845749.1	hypothetical protein	-
KZ686_RS12485 (KZ686_12455)	radA	2790462..2791835 (-)	1374	WP_149319052.1	DNA repair protein RadA	Machinery gene
KZ686_RS12490 (KZ686_12460)	alr	2791947..2793080 (-)	1134	WP_149319053.1	alanine racemase	-
KZ686_RS12495 (KZ686_12465)	lplT	2793579..2794898 (+)	1320	WP_149319054.1	lysophospholipid transporter LplT	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 48742.96 Da
• Isoelectric Point: 7.2040

>NTDB_id=592013 KZ686_RS12485 WP_149319052.1 2790462..2791835(-) (radA) [Cupriavidus cauae strain PHS1]
MAKTKTAKTVYTCTECGGSVPRWQGQCPHCQQWNTLVESVPEAPSARRFQPLAASATVQRLSEIEASDVPRFTSGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLAASRRVLYVSGEESGAQIALRAQRLGIDSPSLGLLAEIQLEKIQAT
LDADKPEVAVIDSIQTLYSEALSSAPGSVAQVRECAAQLTRIAKSSGTTIILVGHVTKEGSLAGPRVLEHIVDTVLYFEG
DTHSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEQTVSGSCVMVTQEGSRPLLVEIQALVDAAHVPN
PRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGE
IRPSPRGQDRLREAAKLGFTQAVIPKANAPKQPIEGLEVIAVERIEQAIERVRYLDG

Nucleotide

• Length: 1374 bp

>NTDB_id=592013 KZ686_RS12485 WP_149319052.1 2790462..2791835(-) (radA) [Cupriavidus cauae strain PHS1]
TTGGCAAAGACCAAGACCGCCAAGACCGTTTACACCTGTACCGAATGCGGCGGCTCCGTGCCGCGCTGGCAGGGGCAGTG
CCCGCATTGCCAGCAATGGAACACGCTGGTCGAAAGCGTGCCCGAGGCGCCCTCGGCGCGGCGCTTCCAGCCGCTGGCCG
CGTCGGCCACGGTGCAGCGGCTGTCCGAGATCGAGGCGTCCGACGTGCCGCGCTTCACCAGCGGCATCGAGGAATTCGAC
CGGGTGCTCGGCGGCGGGCTGGTGGCCGGCGGGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACGCTGCT
GTTGCAGGCGCTGGCGAACCTGGCGGCGAGCCGGCGCGTGCTCTATGTCAGCGGCGAGGAGTCGGGCGCGCAGATCGCGC
TGCGCGCGCAGCGGCTGGGCATCGACAGCCCGAGCCTGGGCCTGCTGGCCGAGATCCAGCTGGAGAAGATCCAGGCGACG
CTCGACGCCGACAAGCCCGAGGTCGCGGTGATCGACTCGATCCAGACGTTGTACTCGGAGGCGCTCAGCTCGGCGCCGGG
CTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTGACCCGGATCGCCAAGAGCAGCGGCACCACCATCATCCTGGTCG
GCCATGTGACCAAGGAGGGCAGCCTGGCCGGGCCGCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGC
GACACGCATTCTTCGCACCGGCTGATCCGCGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTGGGCGTGTTCGCGAT
GACCGAGCGCGGGCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGCAGACCGTGTCCGGTTCCT
GCGTGATGGTCACGCAGGAGGGCTCGCGTCCGCTGCTGGTCGAGATCCAGGCCCTGGTCGATGCGGCGCACGTGCCGAAC
CCGCGCCGCCTGGCGGTCGGCCTCGAGCAGAACCGGCTGGCGCTGCTGCTGGCCGTGCTGCACCGCCACGCGGGCATCGC
CTGCTTCGACCAGGACGTGTTCCTCAATGCGGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCGGTGCTGC
TGTCGATCCACTCGTCGATGCGCAACAAGCCCTTGCCGCGCGGGCTGGTGGTGTTCGGCGAGGTGGGGCTGGCGGGGGAG
ATCCGTCCGAGCCCGCGCGGCCAGGACCGGCTACGCGAGGCCGCCAAGCTGGGCTTCACGCAGGCGGTGATTCCCAAGGC
CAACGCGCCCAAGCAGCCGATCGAGGGGCTGGAGGTGATTGCCGTCGAACGGATCGAACAGGCGATCGAACGCGTGCGCT
ATCTCGACGGCTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (11-38)

• AAA domain (AAA_25) (62-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.658	99.781	0.505
radA	Streptococcus pneumoniae Rx1	46.288	100	0.464
radA	Streptococcus pneumoniae D39	46.288	100	0.464
radA	Streptococcus pneumoniae R6	46.288	100	0.464
radA	Streptococcus pneumoniae TIGR4	46.288	100	0.464
radA	Streptococcus mitis SK321	46.593	99.562	0.464
radA	Streptococcus mitis NCTC 12261	46.256	99.344	0.46