Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KZ686_RS05760 Genome accession   NZ_CP080293
Coordinates   1276834..1278312 (-) Length   492 a.a.
NCBI ID   WP_150084715.1    Uniprot ID   -
Organism   Cupriavidus cauae strain PHS1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271834..1283312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ686_RS05730 (KZ686_05720) - 1272170..1272823 (-) 654 WP_150084691.1 LON peptidase substrate-binding domain-containing protein -
  KZ686_RS05735 (KZ686_05725) rapZ 1272909..1273790 (-) 882 WP_149320113.1 RNase adapter RapZ -
  KZ686_RS05740 (KZ686_05730) - 1274038..1274328 (-) 291 WP_149320114.1 PsiF family protein -
  KZ686_RS05745 (KZ686_05735) hprK 1274528..1275499 (-) 972 WP_006576781.1 HPr(Ser) kinase/phosphatase -
  KZ686_RS05750 (KZ686_05740) ptsN 1275573..1276028 (-) 456 WP_149320115.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KZ686_RS05755 (KZ686_05745) hpf 1276431..1276784 (-) 354 WP_149320116.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KZ686_RS05760 (KZ686_05750) rpoN/rpoN1 1276834..1278312 (-) 1479 WP_150084715.1 RNA polymerase factor sigma-54 Machinery gene
  KZ686_RS05765 (KZ686_05755) lptB 1278490..1279314 (-) 825 WP_149320117.1 LPS export ABC transporter ATP-binding protein -
  KZ686_RS05770 (KZ686_05760) lptA 1279414..1280043 (-) 630 WP_149320118.1 lipopolysaccharide transport periplasmic protein LptA -
  KZ686_RS05775 (KZ686_05765) lptC 1280160..1280789 (-) 630 WP_149320119.1 LPS export ABC transporter periplasmic protein LptC -
  KZ686_RS05780 (KZ686_05770) - 1280798..1281781 (-) 984 WP_149320120.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54928.28 Da        Isoelectric Point: 5.0334

>NTDB_id=592008 KZ686_RS05760 WP_150084715.1 1276834..1278312(-) (rpoN/rpoN1) [Cupriavidus cauae strain PHS1]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQTTTTTPSSEPT
APADSRADGAASADDGYADGAGDDYGGDWSLDDFARRPQSDEDEKTPLQLRDAEPTLREYLMEQLAPLKISTRDKGLAIF
LIESLDDDGYLSASLEEILSELPEELEFELDEVHAMLTLLQSFDPPGVGARNAAECLSLQLRRIEHPQRELAMTIVRHHL
ELLAARDYTRLKKALQVDDMQLKAAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKSGHNWIAQLNPDVMPRLRINDMYA
QILRGAKGDTGAAGLQQKLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=592008 KZ686_RS05760 WP_150084715.1 1276834..1278312(-) (rpoN/rpoN1) [Cupriavidus cauae strain PHS1]
ATGAAACCGTCGCTACAGCTACGCCTCTCCCAGCATCTGGCCCTGACGCCGCAGCTGCAGCAGTCGATCCGGCTGTTGCA
GCTCTCCACGCTGGAACTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAATCCCCTGCTCGAACGCGAAAACGACTGGA
TCGAAAGCCCGCTGCGGGTCGCCGCCGACGGGTCGGTCAATGTCCAGACCACCACCACGACCCCGTCTTCCGAGCCGACG
GCCCCCGCCGATTCGCGCGCGGATGGCGCCGCGTCCGCCGACGACGGCTATGCCGACGGCGCGGGCGACGATTATGGCGG
CGACTGGAGCCTGGACGATTTCGCCCGCCGTCCGCAAAGCGACGAGGACGAGAAAACGCCGCTGCAATTGCGCGATGCCG
AGCCCACGCTGCGCGAATATCTGATGGAGCAATTGGCGCCGCTGAAAATCTCCACGCGCGACAAGGGCCTGGCGATTTTC
CTGATCGAATCGCTCGACGACGACGGCTACCTGAGCGCCTCGCTCGAGGAAATCCTTTCCGAATTGCCTGAAGAGCTCGA
ATTCGAGCTCGACGAAGTGCATGCGATGCTGACGCTGCTGCAAAGCTTCGACCCGCCCGGGGTCGGGGCGCGCAACGCGG
CCGAATGCCTGTCGCTGCAACTGCGCCGCATCGAACATCCGCAGCGCGAGCTGGCGATGACGATCGTGCGCCATCACCTC
GAACTGCTGGCCGCGCGCGATTACACCCGCCTGAAGAAGGCGCTGCAGGTCGACGACATGCAGCTGAAGGCCGCGCACGA
GCTGATCCGCTCGCTCGCGCCCTATCCCGGCCACGCCTACAGCCGGCCGGAAGCGGATTTCGTCGTGCCCGACGTGTTCG
TGCGCAAGAGCGGCCATAACTGGATCGCCCAGCTCAATCCCGATGTGATGCCGCGGCTGCGCATCAACGACATGTATGCG
CAAATCTTGCGCGGTGCAAAAGGCGATACCGGCGCCGCGGGATTGCAGCAGAAACTGCAGGAGGCGCGCTGGCTCATCAA
GAATATCCAGCAGCGTTTCGACACCATTTTGCGCGTCGCACAAGCCATCGTGGAGCGGCAAAAGAATTTCTTCACGCACG
GTGAAATTGCGATGCGCCCCTTGGTTTTGAGGGAGATAGCCGATACACTGGGTCTACACGAGTCGACCATTTCTCGTGTG
ACTACCAATAAGTACATGGCCACCCCGATGGGGACATTCGAGCTGAAATATTTCTTTGGCAGCCATGTATCGACCGAAAC
CGGCGGTGCCGCCTCTTCCACCGCAATCCGTGCGCTGATCAAGCAGTTGATAGGAGCCGAAGACCCCAGAAACCCGTTGT
CCGACAGCCGGATTGCCGAACTGCTGGGGGAACAAGGCTTCGTCGTGGCGCGACGTACCGTCGCCAAATACCGTGAAGCC
TTGAAGATCCCCGCCGTGAACCTTCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.359

100

0.805