Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   M2I89_RS00235 Genome accession   NZ_CP096937
Coordinates   55052..56077 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain NY5520     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50052..61077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I89_RS00210 (M2I89_00210) - 50240..50557 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  M2I89_RS00215 (M2I89_00215) trkA 50706..52079 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  M2I89_RS00220 (M2I89_00220) rsmB 52107..53411 (-) 1305 WP_115288923.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M2I89_RS00225 (M2I89_00225) fmt 53408..54352 (-) 945 WP_034034677.1 methionyl-tRNA formyltransferase -
  M2I89_RS00230 (M2I89_00230) def 54407..54913 (-) 507 WP_003097293.1 peptide deformylase -
  M2I89_RS00235 (M2I89_00235) tsaP 55052..56077 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M2I89_RS00240 (M2I89_00240) dprA 56212..57300 (+) 1089 WP_015502109.1 DNA-processing protein DprA Machinery gene
  M2I89_RS00245 (M2I89_00245) - 57341..57898 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  M2I89_RS00250 (M2I89_00250) - 57908..58885 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  M2I89_RS00255 (M2I89_00255) hemF 59076..59993 (+) 918 WP_034034679.1 oxygen-dependent coproporphyrinogen oxidase -
  M2I89_RS00260 (M2I89_00260) aroE 60051..60875 (+) 825 WP_016264001.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=591950 M2I89_RS00235 WP_003097294.1 55052..56077(+) (tsaP) [Pseudomonas aeruginosa strain NY5520]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=591950 M2I89_RS00235 WP_003097294.1 55052..56077(+) (tsaP) [Pseudomonas aeruginosa strain NY5520]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393