Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KZ799_RS16720 Genome accession   NZ_CP080281
Coordinates   3617263..3617898 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3612263..3622898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ799_RS16705 (KZ799_16710) - 3612970..3614214 (+) 1245 WP_023086056.1 lipoprotein-releasing ABC transporter permease subunit -
  KZ799_RS16710 (KZ799_16715) - 3614302..3614835 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  KZ799_RS16715 (KZ799_16720) comA 3614966..3617191 (+) 2226 WP_258169363.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KZ799_RS16720 (KZ799_16725) exbB 3617263..3617898 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KZ799_RS16725 (KZ799_16730) - 3617895..3618335 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  KZ799_RS16730 (KZ799_16735) lpxK 3618335..3619333 (+) 999 WP_031756493.1 tetraacyldisaccharide 4'-kinase -
  KZ799_RS16735 (KZ799_16740) - 3619371..3619556 (+) 186 WP_003091157.1 Trm112 family protein -
  KZ799_RS16740 (KZ799_16745) kdsB 3619556..3620321 (+) 766 Protein_3303 3-deoxy-manno-octulosonate cytidylyltransferase -
  KZ799_RS16745 (KZ799_16750) - 3620321..3620785 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  KZ799_RS16750 (KZ799_16755) murB 3620782..3621801 (+) 1020 WP_023104547.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=591911 KZ799_RS16720 WP_003091163.1 3617263..3617898(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF17]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=591911 KZ799_RS16720 WP_003091163.1 3617263..3617898(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF17]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81