Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   M2I85_RS25060 Genome accession   NZ_CP096934
Coordinates   5320547..5321161 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain NY5511     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5315547..5326161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I85_RS25040 (M2I85_24980) - 5316990..5317619 (+) 630 WP_003091190.1 CsiV family protein -
  M2I85_RS25045 (M2I85_24985) - 5317665..5318402 (-) 738 WP_003122475.1 S-methyl-5'-thioinosine phosphorylase -
  M2I85_RS25050 (M2I85_24990) nagZ 5318414..5319412 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  M2I85_RS25055 (M2I85_24995) psrA 5319614..5320315 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  M2I85_RS25060 (M2I85_25000) dinR/lexA 5320547..5321161 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  M2I85_RS25065 (M2I85_25005) sulA 5321173..5321658 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  M2I85_RS25070 (M2I85_25010) - 5321680..5321913 (-) 234 WP_003109483.1 hypothetical protein -
  M2I85_RS25075 (M2I85_25015) - 5322119..5322637 (-) 519 WP_003113979.1 DUF6586 family protein -
  M2I85_RS25080 (M2I85_25020) topA 5322744..5325350 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  M2I85_RS25085 (M2I85_25025) - 5325441..5325704 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=591905 M2I85_RS25060 WP_003091196.1 5320547..5321161(+) (dinR/lexA) [Pseudomonas aeruginosa strain NY5511]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=591905 M2I85_RS25060 WP_003091196.1 5320547..5321161(+) (dinR/lexA) [Pseudomonas aeruginosa strain NY5511]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387