Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M2I85_RS02265 Genome accession   NZ_CP096934
Coordinates   490575..490940 (+) Length   121 a.a.
NCBI ID   WP_270005888.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5511     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485575..495940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I85_RS02235 (M2I85_02235) pyrR 486197..486709 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  M2I85_RS02240 (M2I85_02240) ruvX 486821..487255 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  M2I85_RS02245 (M2I85_02245) - 487255..487824 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  M2I85_RS02250 (M2I85_02250) - 487873..488766 (-) 894 WP_003162015.1 energy transducer TonB -
  M2I85_RS02255 (M2I85_02255) gshB 488913..489866 (-) 954 WP_003100943.1 glutathione synthase -
  M2I85_RS02260 (M2I85_02260) pilG 490121..490528 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  M2I85_RS02265 (M2I85_02265) pilH 490575..490940 (+) 366 WP_270005888.1 twitching motility response regulator PilH Machinery gene
  M2I85_RS02270 (M2I85_02270) - 490991..491527 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  M2I85_RS02275 (M2I85_02275) pilJ 491612..493660 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  M2I85_RS02280 (M2I85_02280) pilK 493721..494596 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13308.35 Da        Isoelectric Point: 5.1961

>NTDB_id=591854 M2I85_RS02265 WP_270005888.1 490575..490940(+) (pilH) [Pseudomonas aeruginosa strain NY5511]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRYLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=591854 M2I85_RS02265 WP_270005888.1 490575..490940(+) (pilH) [Pseudomonas aeruginosa strain NY5511]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTTATTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364