Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZ312_RS10555 Genome accession   NZ_CP080260
Coordinates   2257308..2257937 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 135     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2252308..2262937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ312_RS10535 (KZ312_10535) ycbZ 2252697..2254457 (-) 1761 WP_001586869.1 Lon protease family protein -
  KZ312_RS10540 (KZ312_10540) matP 2254643..2255095 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZ312_RS10545 (KZ312_10545) ompA 2255171..2256223 (-) 1053 WP_001305912.1 porin OmpA -
  KZ312_RS10550 (KZ312_10550) sulA 2256580..2257089 (-) 510 WP_059327871.1 SOS-induced cell division inhibitor SulA -
  KZ312_RS10555 (KZ312_10555) sxy/tfoX 2257308..2257937 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZ312_RS10560 (KZ312_10560) yccS 2257900..2260062 (-) 2163 WP_000875037.1 YccS family putative transporter -
  KZ312_RS10565 (KZ312_10565) yccF 2260072..2260518 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KZ312_RS10570 (KZ312_10570) helD 2260641..2262695 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591787 KZ312_RS10555 WP_000839153.1 2257308..2257937(+) (sxy/tfoX) [Escherichia coli strain 135]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591787 KZ312_RS10555 WP_000839153.1 2257308..2257937(+) (sxy/tfoX) [Escherichia coli strain 135]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1