Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M2I83_RS02080 Genome accession   NZ_CP096929
Coordinates   458007..459356 (+) Length   449 a.a.
NCBI ID   WP_057392757.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453007..464356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I83_RS02060 (M2I83_02060) - 453844..454410 (-) 567 WP_003084491.1 hypothetical protein -
  M2I83_RS02065 (M2I83_02065) rsmD 454413..455009 (-) 597 WP_221345477.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M2I83_RS02070 (M2I83_02070) - 455009..456496 (-) 1488 WP_221345478.1 pitrilysin family protein -
  M2I83_RS02075 (M2I83_02075) - 456489..457886 (-) 1398 WP_003084498.1 pitrilysin family protein -
  M2I83_RS02080 (M2I83_02080) pilA 458007..459356 (+) 1350 WP_057392757.1 signal recognition particle-docking protein FtsY Machinery gene
  M2I83_RS02085 (M2I83_02085) ftsE 459353..460024 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  M2I83_RS02090 (M2I83_02090) ftsX 460024..461031 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  M2I83_RS02095 (M2I83_02095) rpoH 461145..461999 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  M2I83_RS02100 (M2I83_02100) - 462064..462669 (+) 606 WP_003084511.1 hypothetical protein -
  M2I83_RS02105 (M2I83_02105) mtgA 462674..463405 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  M2I83_RS02110 (M2I83_02110) - 463442..463819 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  M2I83_RS02115 (M2I83_02115) thiS 463922..464122 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47754.17 Da        Isoelectric Point: 4.5823

>NTDB_id=591646 M2I83_RS02080 WP_057392757.1 458007..459356(+) (pilA) [Pseudomonas aeruginosa strain NY5507]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAPVAEA
PLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGE
GMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVA
REPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQA
AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDG
TAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=591646 M2I83_RS02080 WP_057392757.1 458007..459356(+) (pilA) [Pseudomonas aeruginosa strain NY5507]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCGATGACGTGGCGC
AATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCGGTTGCCGAAGCG
CCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCCCGTCGCACAACCCGAGCCTAT
CCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAG
TCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAA
GGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGC
CGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCG
GCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCG
CGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCT
GCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGG
GCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCC
GCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCT
GAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCG
GGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTTGCCCTGACCAAACTGGACGGC
ACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGAT
CGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(159-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.882

96.437

0.452