Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZX95_RS12610 Genome accession   NZ_CP080246
Coordinates   2688368..2688997 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SYNB1934     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2683368..2693997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX95_RS12590 ycbZ 2683756..2685516 (-) 1761 WP_000156504.1 AAA family ATPase -
  KZX95_RS12595 matP 2685702..2686154 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  KZX95_RS12600 ompA 2686232..2687284 (-) 1053 WP_001528868.1 porin OmpA -
  KZX95_RS12605 sulA 2687640..2688149 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  KZX95_RS12610 sxy/tfoX 2688368..2688997 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZX95_RS12615 yccS 2688960..2691122 (-) 2163 WP_000875041.1 YccS family putative transporter -
  KZX95_RS12620 yccF 2691132..2691578 (-) 447 WP_001261236.1 YccF domain-containing protein -
  KZX95_RS12625 helD 2691701..2693755 (+) 2055 WP_001443200.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=591618 KZX95_RS12610 WP_000839136.1 2688368..2688997(+) (sxy/tfoX) [Escherichia coli strain SYNB1934]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591618 KZX95_RS12610 WP_000839136.1 2688368..2688997(+) (sxy/tfoX) [Escherichia coli strain SYNB1934]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99