Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ITG12_RS20785 Genome accession   NZ_CP080239
Coordinates   910263..911564 (+) Length   433 a.a.
NCBI ID   WP_081634981.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 905263..916564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS20775 (ITG12_20690) - 907735..908700 (+) 966 WP_038878817.1 peptidoglycan DD-metalloendopeptidase family protein -
  ITG12_RS20780 (ITG12_20695) ylqF 909022..909966 (+) 945 WP_038867858.1 ribosome biogenesis GTPase YlqF -
  ITG12_RS20785 (ITG12_20700) cqsA 910263..911564 (+) 1302 WP_081634981.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ITG12_RS20790 (ITG12_20705) - 911664..913709 (-) 2046 WP_248874959.1 hybrid sensor histidine kinase/response regulator -
  ITG12_RS20795 (ITG12_20710) - 914019..914636 (+) 618 WP_038878822.1 HAD family phosphatase -
  ITG12_RS20800 (ITG12_20715) - 914712..915260 (-) 549 WP_038867865.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48577.57 Da        Isoelectric Point: 6.7033

>NTDB_id=591594 ITG12_RS20785 WP_081634981.1 910263..911564(+) (cqsA) [Vibrio sp. ED002]
MPSLQGHAKLCNLTNDSSFIFVKLYSCQRWRFSVLRRELIMSDKSKTKPLPSFVEERLDFYLQDLIEQNENQKHLVLGKR
PKSNAVIMQSNDYLALSHNEQIQKAHRDAIVEHDDNVVMSAIFLQDDSSKPAFEALLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMSHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMASEFD
CALVVDESHSLGTHGPNGSGLVKALELTDKVDFITVSLAKTFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRL
EKTLDVIKGSDHKRKDLFQRAKELRTGLKQIGFNIRSESQIVALECGSERNTERVRDFLEDRDVFGAVFCRPATGKNKNI
IRFSINADMTPRDIDHVLTVCQEAFNHPELEFV

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=591594 ITG12_RS20785 WP_081634981.1 910263..911564(+) (cqsA) [Vibrio sp. ED002]
ATGCCGAGTTTGCAAGGACACGCAAAGTTATGCAACTTGACTAATGACAGTTCATTCATATTCGTCAAACTATATAGCTG
TCAGCGCTGGCGTTTTTCTGTATTACGAAGAGAACTTATTATGAGTGATAAATCGAAAACGAAACCACTTCCTTCTTTTG
TTGAGGAACGCCTGGATTTTTACCTTCAAGATTTGATTGAACAAAACGAGAACCAAAAGCACTTGGTTCTTGGTAAACGT
CCAAAAAGCAACGCGGTAATCATGCAAAGTAATGACTACCTAGCGTTGTCTCATAACGAACAAATCCAGAAAGCACATCG
GGATGCGATCGTTGAACACGACGATAACGTGGTGATGTCAGCAATCTTCTTACAAGACGATTCCTCCAAGCCTGCTTTCG
AAGCATTGTTAGCCGACTATGTTGGTATGGGCAGTTGTTTACTTTCCCAATCGGGATGGGCTGCTAACATTGGTTTGCTG
CAGACCATTTGTCCGCCTGAAACACCGGTCTATATCGACTTCTTTGCGCATATGTCATTGTGGGAAGGTATTCGGGCAGC
AGGAGCGCAAGCGCATCCATTCATGCACAACAACATGAGCCACTTGCGTAAGCAGATCCAGCGTCATGGCTCAGGCGTCA
TCGTGGTAGATTCGGTCTATAGCACGATTGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGAGTGAGTTTGAT
TGTGCTTTAGTGGTGGATGAATCCCACTCATTAGGAACACACGGGCCTAACGGCTCTGGCTTGGTAAAAGCGCTGGAACT
CACTGATAAAGTCGATTTCATTACTGTCAGTCTGGCAAAAACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAA
AACTCGCGAAAACACTTCCTTTTGTTGCTTATCCAGCGATTTTTAGCTCGACGGTATTGCCTCAAGAAGTGATTCGCTTG
GAGAAAACGTTGGACGTCATTAAAGGGTCCGATCATAAACGTAAAGACCTTTTTCAGCGCGCCAAAGAGCTCAGAACTGG
ATTAAAACAGATTGGGTTTAATATTCGGAGCGAATCTCAAATTGTTGCCTTAGAGTGCGGTAGCGAACGAAATACTGAAC
GTGTGCGTGACTTTCTCGAAGACCGTGATGTTTTTGGCGCAGTATTCTGTCGCCCTGCAACAGGAAAGAACAAAAACATC
ATACGTTTCTCGATCAACGCCGATATGACACCACGAGACATCGACCACGTGCTTACGGTATGCCAGGAGGCGTTTAACCA
TCCAGAATTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

89.376

0.513