NTDB

Overview

Name	luxP	Type	Regulator
Locus tag	ITG12_RS17930	Genome accession	NZ_CP080239
Coordinates	243333..244430 (+)	Length	365 a.a.
NCBI ID	WP_038867368.1	Uniprot ID	A0A2N7N0H9
Organism	Vibrio sp. ED002
Function	autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 238333..249430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG12_RS17900 (ITG12_17820)	-	238598..239590 (+)	993	WP_104026547.1	Gfo/Idh/MocA family oxidoreductase	-
ITG12_RS17905 (ITG12_17825)	-	239682..241019 (-)	1338	WP_038877631.1	MATE family efflux transporter	-
ITG12_RS17910 (ITG12_17830)	-	241143..241457 (-)	315	WP_005373603.1	DUF496 family protein	-
ITG12_RS17915 (ITG12_17835)	-	241685..241900 (+)	216	WP_042604483.1	hypothetical protein	-
ITG12_RS17920 (ITG12_17840)	-	241994..242647 (+)	654	WP_038877628.1	YceH family protein	-
ITG12_RS17925 (ITG12_17845)	-	242644..242955 (+)	312	WP_038877626.1	GIY-YIG nuclease family protein	-
ITG12_RS17930 (ITG12_17850)	luxP	243333..244430 (+)	1098	WP_038867368.1	autoinducer 2-binding periplasmic protein LuxP	Regulator
ITG12_RS17935 (ITG12_17855)	luxQ	244430..247006 (+)	2577	WP_038877624.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	-
ITG12_RS17940 (ITG12_17860)	-	247065..247727 (-)	663	WP_038877621.1	flagellar brake protein	-
ITG12_RS17945 (ITG12_17865)	-	247822..248748 (-)	927	WP_038877807.1	DMT family transporter	-
ITG12_RS17950 (ITG12_17870)	-	248897..249358 (+)	462	WP_038867482.1	Lrp/AsnC family transcriptional regulator	-

Sequence

Protein

Download Length: 365 a.a. Molecular weight: 41561.01 Da Isoelectric Point: 6.1806

                                >NTDB_id=591592 ITG12_RS17930 WP_038867368.1 243333..244430(+) (luxP) [Vibrio sp. ED002]

MKKAVLLSLISMIGFSPISHATQVLNGYWAYQDFLDEFPEQRKLTNALAEAVRERPVPFSKTRTRPLKISVVYPGQQVSD

YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI

TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT

KQSGYDAAKASLAKYPDVDFIYACSTDVALGAVDALSELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA

EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN

Nucleotide

Download Length: 1098 bp

                                >NTDB_id=591592 ITG12_RS17930 WP_038867368.1 243333..244430(+) (luxP) [Vibrio sp. ED002]

ATGAAAAAAGCGGTACTACTTTCTCTGATTTCTATGATCGGTTTTTCACCGATTTCACATGCGACACAAGTGCTTAATGG

CTATTGGGCATACCAAGATTTTCTTGATGAGTTTCCTGAGCAAAGAAAGCTGACCAATGCCTTAGCAGAAGCCGTTCGCG

AACGTCCTGTGCCATTCTCTAAAACCAGAACACGTCCACTTAAAATATCCGTCGTATATCCGGGTCAACAAGTGTCAGAT

TACTGGGTACGAAACATTGCTGCTTTTGAAAAGCGTTTAGATAAGTTGAATATTAACTATCAAATTAACCAAGTGTTTAC

GCGTCCGAATGCCGATATAAAGCAACAGAGTTTGTCTTTAATGGAAGCATTAAAAAGTAAATCTGATTACTTAATCTTCA

CTCTGGATACCACCAGACATCGTAAATTTGTTGAACATGTATTGGATTCAACAAATACCAAGCTGATTTTACAAAATATC

ACTACGCCAGTACGAGAGTGGGACAAACATCAGCCGTTTTTATATGTTGGGTTTGACCATGCAGAAGGCAGTCGAGAATT

AGCAACGGAATTCGGAAAGTACTTCCCAAAACACACTTATTACAGCGTGCTTTATTTTTCTGAGGGTTACATTAGTGACG

TAAGAGGTGATACTTTTATTCACCAAGTTAACCGTGATAATAACTTTGAGCTACAATCAGCCTACTATACAAAAGCAACA

AAGCAGTCTGGTTATGATGCTGCGAAAGCGAGTTTAGCCAAATACCCAGATGTTGATTTTATTTATGCTTGCTCTACTGA

TGTGGCGTTGGGTGCGGTTGATGCACTTTCTGAATTGGGAAGAGAAGACATTATGATTAACGGATGGGGTGGGGGCTCTG

CCGAGTTAGACGCCATCCAAAAAGGCGATCTCGACATTACTGTCATGCGTATGAATGACGACACCGGGATTGCGATGGCA

GAAGCCATTAAGTGGGACTTGGAAGGAAAGCCGGTACCTACCGTGTATTCCGGTGATTTTGAAATTGTCACGAAAGCGGA

TTCACCGGAAAGAATCGAAGCGCTTAAGAAGCGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2N7N0H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
luxP	Vibrio cholerae strain A1552	63.462	99.726	0.633

Detailed information NTG0591592