Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ITG12_RS16300 Genome accession   NZ_CP080238
Coordinates   3504564..3505967 (+) Length   467 a.a.
NCBI ID   WP_038869346.1    Uniprot ID   A0A2N7N004
Organism   Vibrio sp. ED002     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3499564..3510967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS16295 (ITG12_16210) uvrB 3502221..3504251 (+) 2031 WP_038881594.1 excinuclease ABC subunit UvrB -
  ITG12_RS16300 (ITG12_16215) luxO 3504564..3505967 (+) 1404 WP_038869346.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ITG12_RS16305 (ITG12_16220) luxU 3505964..3506308 (+) 345 WP_080869631.1 quorum-sensing phosphorelay protein LuxU -
  ITG12_RS16310 (ITG12_16225) - 3506407..3507300 (-) 894 WP_038869348.1 YvcK family protein -
  ITG12_RS16315 (ITG12_16230) moaA 3507596..3508585 (+) 990 WP_038869349.1 GTP 3',8-cyclase MoaA -
  ITG12_RS16320 (ITG12_16235) moaB 3508682..3509194 (+) 513 WP_038869350.1 molybdenum cofactor biosynthesis protein B -
  ITG12_RS16325 (ITG12_16240) moaC 3509221..3509700 (+) 480 WP_038869352.1 cyclic pyranopterin monophosphate synthase MoaC -
  ITG12_RS16330 (ITG12_16245) moaD 3509697..3509954 (+) 258 WP_038869356.1 molybdopterin synthase sulfur carrier subunit -
  ITG12_RS16335 (ITG12_16250) moaE 3509956..3510411 (+) 456 WP_038881598.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52249.77 Da        Isoelectric Point: 5.8861

>NTDB_id=591591 ITG12_RS16300 WP_038869346.1 3504564..3505967(+) (luxO) [Vibrio sp. ED002]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ISKFIEPEIMTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNNREEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=591591 ITG12_RS16300 WP_038869346.1 3504564..3505967(+) (luxO) [Vibrio sp. ED002]
ATGCAACAGATAACAGAAGGTCAAAAGTCACGTTACCTATTAATGGTCGAAGATACCGCTTCCGTTGCGGCATTGTACCG
TTCTTACCTAACGCCACTCGGCATTGATATCAATATTGTTGGAACAGGCAGAGATGCAATCGAAAGCCTGAATCACCGTA
TTCCGGATCTTATTCTTCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGTCAC
CCTGATGTGCCAATTATTTTCATGACTGCTCACGGTTCTATCGATACCGCGGTAGAGGCGATGCGTCATGGCTCTCAAGA
TTTCTTAATCAAACCCTGTGAGGCTGATCGGCTGCGCGTAACGGTAAATAACGCGATTCGTAAGGCAACGAAATTAAAGA
ATGAAGCCGACAACCCAGGTAACCAAAACTACCAAGGCTTCATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACC
ATTGACTCGGCAGCGAGCAGCAAAGCCAGTATCTTCATTACTGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
GATTCACGCAGCAAGCAAACGTGGCGATAAGCCGTTTATTGCGATCAACTGTGCTGCTATCCCGAAAGATCTGATCGAAA
GTGAGTTGTTTGGCCACGTTAAAGGTGCGTTTACCGGAGCAGCAAATGACCGTCAAGGTGCAGCTGAACTGGCTGACGGC
GGGACGTTGTTCCTTGATGAACTATGTGAAATGGACTTGGATTTACAAACCAAGTTATTGCGTTTCATCCAGACGGGTAC
GTTCCAAAAAGTAGGCTCTTCTAAGATGAAGAGTGTGGATGTTCGCTTTGTGTGTGCGACTAACCGCGACCCGTGGAAAG
AAGTACAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGCCTTTACGTGATTCCTTTACATTTGCCGCCACTACGCGAA
CGTGGTGAAGACGTGATCGAAATTGCGTATTCTTTGCTAGGCTATATGTCTCACGAGGAAGGCAAGAGTTTTATTCGTTT
TGCACAAGATGTGATTGAACGTTTCAACAGTTACGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTGTTGCGTAATA
TCGTGGTGCTGAACAACGGCAAAGAAATTACTCTGGACATGCTACCACCACCACTGAATCAACCGGTGGTTCGTCAATCG
ATTTCAAAATTTATTGAACCTGAAATCATGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAAAAAATGGCCATCGA
GCAGGCGATTCAGGCGTGTGATGGCAATATTCCACGCGCTGCGGGTTACTTAGATGTCAGCCCTTCAACCATATATCGCA
AGTTGCAAGCTTGGAATAATAGGGAAGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N004

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829