Detailed information NTG0591590

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: ITG12_RS14285
• Genome accession: NZ_CP080238
• Coordinates: 3059223..3062609 (-)
• Length: 1128 a.a.
• NCBI ID: WP_038878951.1
• Uniprot ID: -
• Organism: Vibrio sp. ED002
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3054223..3067609

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG12_RS14270 (ITG12_14190)	-	3054538..3055563 (-)	1026	WP_038878949.1	ABC transporter permease	-
ITG12_RS14275 (ITG12_14195)	-	3055566..3056552 (-)	987	WP_038865841.1	ABC transporter permease	-
ITG12_RS14280 (ITG12_14200)	-	3056723..3058405 (-)	1683	WP_038865843.1	ABC transporter substrate-binding protein	-
ITG12_RS14285 (ITG12_14205)	chiS	3059223..3062609 (-)	3387	WP_038878951.1	response regulator	Regulator
ITG12_RS14290 (ITG12_14210)	rsmC	3062839..3063864 (-)	1026	WP_038878952.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
ITG12_RS14295 (ITG12_14215)	-	3063941..3065026 (-)	1086	WP_038865847.1	AI-2E family transporter	-
ITG12_RS14300 (ITG12_14220)	hemL	3065386..3066681 (-)	1296	WP_038865849.1	glutamate-1-semialdehyde 2,1-aminomutase	-
ITG12_RS14305 (ITG12_14225)	erpA	3066928..3067269 (+)	342	WP_005439421.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127376.18 Da
• Isoelectric Point: 5.5014

>NTDB_id=591590 ITG12_RS14285 WP_038878951.1 3059223..3062609(-) (chiS) [Vibrio sp. ED002]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIQGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLTGSYKDSALGRTFKRLSEDVNARRKVNEDYTPVVFSDFEIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIETLLVGSDHKPRTINTKQDNIQNSLEIIDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIVLVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTQRKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRIEQVLYNLIGNAIKYTSEGKIVISANVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLATEEEIKATQTLAARGHFQIPEANLENTDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPDTLALIEQEKPELLLLDIMMPGMSGYQVCSELRNTYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSCYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDAMTHA
LEYWESVTGETKFAFAEQSGFWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLNSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=591590 ITG12_RS14285 WP_038878951.1 3059223..3062609(-) (chiS) [Vibrio sp. ED002]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATCAC
GCCTTTGACGATCACTGCGATTTTCTTCCTGCAGTCACACAGTAAAGATCTTCAAGAACAAAGTACCTCACACCTACTTT
CTGTGCGTGACACGAAGCAACAACAGATCATCGACTACTTTGCGGCTCAAGAAACTGAGGTCATGGGCTTTGTTCGCTCA
GAATTGGCGTATGCCAGTGGTGGTCGATTCTATGGTTTAGTCAATGCATTCAGTCGCCTAGGGCATGATATTGACGAAGC
AAGAGAGAACGCACAGCAACGTTATATCCAAGGCAGTGGCGACCAGATAAAAACTTCAATTTTGCCAGAGTCCTCTAACT
ATGTTGGTAGTGAGCGTTATCGCCTATTACATAAACGCTACCACTGGGCGTATCTAGAACTGTTAAAGCGCTCTGACTTC
AACGACATCTTGTTGGTCGACATTGACGGTAACGTGACTTATTCAATCAATAAAGATGACAATTACGGCACAAACTTACT
GACTGGCAGCTATAAAGACAGCGCCTTGGGCCGAACATTCAAACGTCTGTCGGAGGACGTTAATGCGCGTCGTAAAGTCA
ATGAAGATTACACACCTGTTGTGTTTTCTGACTTTGAGATCGAAAACGGTAAGCAAGTCGCCTGGCTAGGTGCGCCGATT
GTTCAGCAAGGTTACCTGCACAGCTATGCCATGTTCCGACTACCAAACAATGGCATTACAAAGCTAATTGCAGAAATTAA
CCGTGATTCTTCTATTGAGACTTTGTTGGTTGGCAGTGATCACAAACCTCGTACAATTAACACCAAGCAAGACAACATCC
AAAACAGCCTAGAAATTATCGACAAAGCACTCGCGGGCGAAACCGAAGTAGGCACTTACAGCAACCGCTTAGGTGAAGAG
ATGATCGCGGCGTTTGCACCCATTGAAACTCGTGGTCTAACTTGGGCGCTAGTCGTACAGCTTCCTGAAAAAGAAGCGTT
TGCCCGTGTCCATCAGCTTGAGAAACTGTTTGTGATTGCGATGTTGATTGCAATTGTATTAGTCGTTATCGCTTCACATT
ACTTATCTAATTTCATCACTTCGCCGCTACTCAAGCTTACTTGGGCAGCAGAGAAAGTGTCTGCTGGTGACTTAGATGAG
ACGACCTTTAATACTCAGCGAAAAGATGAGATCGGGCGTCTTGCGATCAGCTTTGAACGTATGCAGCGCTCAATTCGAGA
AAAGATTCAAACGATTAAACAACAAAACGAAGAGCTTGAGAGCAACATTAAGTTGATTCAAAAGCAAAACGAGGAGTTGC
AATTAGCAGACAAACTCAAAGATGAATTCTTAGCAACTACGTCTCACGAATTGCGGACACCGCTACACGGCATGGTGGGG
ATTGCAGAGACATTGGTATCTGGCGCAAACGGTGTGATTCCTGCGAGCCAAAAATACCAGCTAGACATCATTATTAAGAG
TGGTCAGCGCTTGGCAAATCTCGTTGATGATTTATTGGATTATCATAAGATGCGCTATGGCAGCATGGATATCCAAAAAT
CAGCGGTAAGCTTAGCAAGTGCAACACGTTTGGTACTGGAACTCTCTGGCCACCTGTTAGGTAACAAAACAATCCGCATC
ATTAACCAAGTCCCTGCGGACTTAAAAGCGGTCTCTGCCGATCCACAACGTATAGAGCAAGTGCTTTACAATTTGATTGG
TAACGCAATTAAGTACACCTCAGAAGGTAAAATTGTCATCTCCGCAAATGTGGTGGACGATCAGGTGCGCGTCCAAGTCG
TTGATACTGGCCAAGGTATCCCAGCGGAACATTTGGAGCACATCTTTGAACCGCTCATTCAGGCGGGCCAAGATGCAAGT
CGTTACCGTCAGGGTGCAGGACTCGGCCTATCCATTAGCCGTCAGCTTATCGAGTTGATGGGCGGCTCACTGTATGTAAG
TAGTCAACCAATGGTAGGAACAACCTTTAGCTTCACTTTACCTCTTGCAACAGAAGAGGAAATAAAAGCAACACAAACTC
TGGCGGCTCGTGGTCACTTCCAAATCCCTGAAGCAAATTTGGAAAACACCGACGACTTATCTCTGCCAGAAAACCCGGAT
GGTCCACTACTCTACGTCGCAGATGATGAACCAGTAAACTTACGCGTTTTAGAGAGCTTCTTACGATTGGAAGGCTATCG
AGTGCGTACGATTTCAGATGGCCCTGATACGCTAGCGTTAATTGAACAAGAGAAACCAGAGCTGTTGCTATTGGATATCA
TGATGCCAGGCATGAGTGGCTACCAGGTATGTAGCGAGTTACGTAACACTTACGACCACGCAGAACTGCCGATCATCATG
TTAACGGCATTAAGCCAGACAGAAGATCGTGTAAGAGGCTTCGAGGCTGGTGCAAATGATTACTTGTCCAAACCATTTAA
TAAACAAGAACTAGCCGCTCGAATCCAAGCGCATTTGACAGCAAGCAAAGCCGAAATGCGTCACATGGAAAACAAGTTGC
TTGAATCTGAGCTGCGTCAACGCGCAGAAGTCGAAGCCAGTTTACTTGAAACACAAGGACGTTTGTTAGAGCAACTTGAA
TCTGCTCCAGAGGCCATCATCTGTTTGCGAGAAGACCAACGAATTCGCTTTGCCAACGAGGCGGCTTGTAAACTCTTCAA
ACGCAGCCTAGAACAGTTAAAACGCTCATCAGCTGATGAACTCATTGCGCCAAAATTCTTAACCGTCAAGCAACCACACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATCCGTCAAAACATTGAAGCAGACATTCTCAAACTGCCAGAAGGCTCT
GGTTTAGACGTTATGTACATCTTTAACGTTGGTGGTGGAGCAAACGCAGCACGTATTCATAATCTGGAAACCGCAGTAGA
AGTTCTTTCATGCTATGCGTTCGATGGAGACAAAGATCAACTACAAAAACTGAAAGAGCTGGGCGGAGAGTTTACTCGTC
TTGCCGACAAAGCATTAGGCAATAAGAAAGATAAACAAGAGTTGATGCGTGAAGTACTGGTTGATGCGATGACACATGCT
TTAGAATACTGGGAGTCCGTTACAGGAGAAACCAAGTTTGCTTTCGCTGAGCAAAGTGGCTTTTGGCGTGTTTACCTAGA
CCGCAGTACATTACAGACTCGAACACTTGATAAATACATGCGCATCGAAACTCTGCCAAAAACACCACGCTGGAGAACCG
TTTTAAACTCGATAGAGTTTATTCTTGAGCACTGTAAAGAACAAAGCCCAGAACGTGCTTACATCGAAGCACAGCGGGAC
AAACTGCAAAGGCTCCTCACGAGCTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.616	100	0.767