Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ITG12_RS14010 Genome accession   NZ_CP080238
Coordinates   2991511..2992029 (+) Length   172 a.a.
NCBI ID   WP_038870464.1    Uniprot ID   A0A2N7N4U2
Organism   Vibrio sp. ED002     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2986511..2997029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS14000 (ITG12_13920) gshA 2989227..2990795 (+) 1569 WP_038878898.1 glutamate--cysteine ligase -
  ITG12_RS14005 (ITG12_13925) - 2990815..2991420 (+) 606 WP_164492027.1 hypothetical protein -
  ITG12_RS14010 (ITG12_13930) luxS 2991511..2992029 (+) 519 WP_038870464.1 S-ribosylhomocysteine lyase Regulator
  ITG12_RS14015 (ITG12_13935) - 2992123..2993397 (-) 1275 WP_038870466.1 CNNM domain-containing protein -
  ITG12_RS14020 (ITG12_13940) - 2993552..2994346 (-) 795 WP_248873154.1 inner membrane protein YpjD -
  ITG12_RS14025 (ITG12_13945) ffh 2994560..2995945 (+) 1386 WP_038870469.1 signal recognition particle protein -
  ITG12_RS14030 (ITG12_13950) rpsP 2996156..2996404 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  ITG12_RS14035 (ITG12_13955) rimM 2996431..2996979 (+) 549 WP_038870471.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19128.88 Da        Isoelectric Point: 4.7373

>NTDB_id=591584 ITG12_RS14010 WP_038870464.1 2991511..2992029(+) (luxS) [Vibrio sp. ED002]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=591584 ITG12_RS14010 WP_038870464.1 2991511..2992029(+) (luxS) [Vibrio sp. ED002]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACTCGCATGAATGCACCTGCAGTACGAGTGGCTAAAACGATGCAAAC
CCCTAAAGGGGATACCATCACGGTATTCGACTTGCGCTTTACTGCCCCGAACAAAGACATCCTTTCTGAGCGAGGAATTC
ACACGCTAGAGCACTTGTATGCGGGCTTTATGCGCAATCATCTAAATGGTGAAAGTGTTGAGATTATTGATATTTCACCA
ATGGGCTGTCGTACAGGTTTTTACATGAGTCTAATCGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAACCAAAACAAGATTCCTGAGCTGAACGAGTACCAATGTGGTACAGCGGCAATGC
ACTCTCTGGATGAAGCGAAGCAAATTGCAAAGAACATTCTAGAAGCGGGGGTTGCGGTGAATAAGAATGATGAGCTGGCA
CTACCAGAATCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N4U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866