Detailed information NTG0591553

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ITG12_RS03925
• Genome accession: NZ_CP080238
• Coordinates: 820143..821564 (+)
• Length: 473 a.a.
• NCBI ID: WP_038874738.1
• Uniprot ID: -
• Organism: Vibrio sp. ED002
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 815143..826564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG12_RS03905 (ITG12_03830)	-	815493..816104 (-)	612	WP_248873688.1	flavin reductase family protein	-
ITG12_RS03910 (ITG12_03835)	-	816772..817467 (+)	696	WP_039974532.1	NAD(P)H-binding protein	-
ITG12_RS03915 (ITG12_03840)	-	817659..819032 (+)	1374	WP_038868624.1	L-cystine transporter	-
ITG12_RS03920 (ITG12_03845)	-	819262..819942 (+)	681	WP_038874741.1	DUF1826 domain-containing protein	-
ITG12_RS03925 (ITG12_03850)	sbcB	820143..821564 (+)	1422	WP_038874738.1	exodeoxyribonuclease I	Machinery gene
ITG12_RS03930 (ITG12_03855)	-	821623..821997 (+)	375	WP_038868628.1	CidA/LrgA family protein	-
ITG12_RS03935 (ITG12_03860)	-	821999..822676 (+)	678	WP_038874735.1	LrgB family protein	-
ITG12_RS03940 (ITG12_03865)	cdd	822945..823832 (+)	888	WP_038874734.1	cytidine deaminase	-
ITG12_RS03945 (ITG12_03870)	purT	823980..825155 (+)	1176	WP_038874732.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
ITG12_RS03950 (ITG12_03875)	-	825235..825885 (-)	651	WP_038874729.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54487.79 Da
• Isoelectric Point: 4.9782

>NTDB_id=591553 ITG12_RS03925 WP_038874738.1 820143..821564(+) (sbcB) [Vibrio sp. ED002]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKSKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILDLSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEL
IGIDRQKCLSNLALLRQHPEIRDKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=591553 ITG12_RS03925 WP_038874738.1 820143..821564(+) (sbcB) [Vibrio sp. ED002]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAGTCCAGCCAAAGATCGTCCGAG
CCAATTCGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAACCATTAGTCATGTATTGCCGACCACCTGCTG
ATTACCTCCCTTCTCCCGAAGCAGCTTTGATTACCGGTATCACGCCGCAAAAAGCAATGCAAGAAGGCTTACCCGAGCCA
GAATTTATTGCAAAAATTCACGCAGAGCTTTCGAAGTCAAAGACCACTAGCCTTGGATATAACAGTATTCGTTTCGATGA
TGAAGTAACACGCTACACCTGTTATCGTAACTTTATCGACCCTTACGCATGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATTTGTTGGACGTAATGCGCGCATGTCATGCGCTTCGGCCAGAAGGCGTGGAATGGCCAGAAAATGATGAAGGCTTTACC
AGCTTTAAATTGGAGCACTTGTCGGTAGCCAACGGTATCGAGCACAGTAACGCCCATGATGCGATGGCCGACGTCATCGC
GACCATCGAAATGGCGAAGAAAGTCAAAGCGGCACAACCAAAGCTGTTTGATTACTTTTTCTCTATGCGTAACAAACGCA
AGCTGAACGACCTTGTTGATATCGTCAACATGACACCGTTAATGCACGTTTCTGGCATGTTAGGACGTGAATGCCAGTAT
ACAAGCTGGATCGTACCTGTCGCTTGGCATCCAACAAACAACAACGCCGTTATCACGATCGACTTGGCAAAAGATCCTCA
GCCGATCCTCGACCTTTCGGCAGAAGAGCTAAAAGAACGCTTGTACACCAAACGCGATGAATTAGGAGACTTGCTTCCTG
TTCCTGTCAAACTGGTGCATTTGAATAAGTGCCCTATTCTTGCTCCTGCAAAGACTTTGACAGCCGAAAACGCAGAGTTG
ATTGGTATTGATCGCCAAAAATGCTTAAGCAATCTTGCTTTACTTCGTCAGCATCCAGAGATCCGAGACAAACTTATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGATGACGTTGATACGCAGCTGTACGATGGATTTTTCTCCCCAGCCG
ATCGAGCAGCAATGGATATCATCCGAGAAACGGATCCAAACAACCTCGCAGCGCTTGATATCGAATTCGACGATAAACGA
ATTAAACCACTGTTGTTCCGTTACCGTGCCCGTCACTACGCTGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCACTATTAAAATCTGTCTATCGTTACGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.224	100	0.782