Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ITG12_RS03300 Genome accession   NZ_CP080238
Coordinates   661523..663049 (+) Length   508 a.a.
NCBI ID   WP_038874989.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 656523..668049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS03275 (ITG12_03205) - 656871..657191 (+) 321 WP_038872685.1 STAS domain-containing protein -
  ITG12_RS03280 (ITG12_03210) - 657218..658066 (+) 849 WP_038874997.1 OmpA family protein -
  ITG12_RS03285 (ITG12_03215) - 658063..660162 (+) 2100 WP_038874996.1 SLBB domain-containing protein -
  ITG12_RS03290 (ITG12_03220) - 660162..660848 (+) 687 WP_038874993.1 CpsD/CapB family tyrosine-protein kinase -
  ITG12_RS03295 (ITG12_03225) - 660861..661244 (+) 384 WP_038874991.1 Hpt domain-containing protein -
  ITG12_RS03300 (ITG12_03230) luxO 661523..663049 (+) 1527 WP_038874989.1 sigma-54 dependent transcriptional regulator Regulator
  ITG12_RS03305 (ITG12_03235) - 663024..664103 (+) 1080 WP_038874988.1 glycosyltransferase family 4 protein -
  ITG12_RS03310 (ITG12_03240) - 664256..665440 (+) 1185 WP_038874986.1 glycosyltransferase -
  ITG12_RS03315 (ITG12_03245) - 665451..666623 (+) 1173 WP_038874984.1 glycosyltransferase family 4 protein -
  ITG12_RS03320 (ITG12_03250) - 666616..668046 (+) 1431 WP_038874982.1 oligosaccharide flippase family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56874.06 Da        Isoelectric Point: 6.0753

>NTDB_id=591552 ITG12_RS03300 WP_038874989.1 661523..663049(+) (luxO) [Vibrio sp. ED002]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWVNENEIPTSVIIA
TAHGSVDIAVGLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAIHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATVAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGATKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYSKQDKKKFNNIDNEAQYVIKHYDWPGNVRQLQNIIRNIVVLNNEDKVTVAHLPAQLTRKPSKARVITQP
VEPAPTTVAKPSPIQPVEHIATDMLPQEPVTRPEPIPMSASAQVASPYFNTDGTIRPMWKVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEANLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=591552 ITG12_RS03300 WP_038874989.1 661523..663049(+) (luxO) [Vibrio sp. ED002]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCACTAGCCATACTATACAAACAGTATGTCAAGGACGAACCTTA
CGACATCTTTCACGTAGAAACTGGACGTGAGGCCATCCAATTCATTGAGAGAAGTAAACCGCAACTCATCATTCTCGATT
TAAAATTACCCGATATGTCCGGGGAAGACGTTCTTGATTGGGTCAATGAGAATGAAATTCCAACTTCAGTCATCATTGCA
ACCGCACATGGCAGCGTAGACATTGCGGTAGGTTTAATTCAAAAAGGTGCGGAAGACTTTCTTGAAAAGCCCATCAATGC
AGACCGACTCAAGACCTCTGTTGCACTTCACCTTAAACGTGCCAAGTTAGAAAACTTAGTAGAAAACATTCAATCTACCT
TCGACCGACACAATTACCATGGATTCATCGGTTCTAGTTTGCCAATGCAAGCCGTCTACAAAACCATTGATGCTGTCGCT
CCAACCTCTGCTAGTGTATTTATCGTTGGTGAGAGTGGTACTGGTAAAGAAGTCTGTGCCGAAGCAATCCATCGTCAAAG
TGATCGTCGTGATAAACCCTTTATTGCCATCAACTGTGGTGCGATTCCACGAGATTTAATGGAAAGCGAAATTTTTGGTC
ACGTTAAAGGCGCATTTACTGGTGCGACAACAGATAGGAAAGGTGCAGCAACCGTTGCTCATGGTGGAACCCTCTTCCTA
GATGAACTGTGTGAGATGGAATTGGAAATGCAGAAAAAGCTGCTCCGTTTTCTACAAACAGGCACTTACACGCCACTTGG
CGCGACCAAAGAAATGAAAGTGGATGTTCGCATCATCTGTGCGACAAACCGCGACCCACTTACGGAAGTCGAAGAAGGCC
GCTTCCGCGAAGATTTATACTATCGCGTCCATGTTGTACCTATTGATATGCCGCCACTCAGAGAGCGAGGTAGTGACATT
GTCACTCTTGCTAAGCATTTTCTGACCACCTACTCCAAGCAGGACAAAAAGAAGTTCAACAATATCGATAATGAAGCACA
GTACGTGATCAAACATTACGACTGGCCGGGGAATGTTCGTCAATTGCAAAACATCATCCGTAACATCGTGGTGTTAAACA
ATGAAGACAAAGTCACCGTCGCGCATCTACCCGCGCAGCTAACTCGCAAGCCATCAAAAGCACGTGTAATTACGCAGCCC
GTAGAACCCGCACCGACCACCGTTGCTAAGCCTTCTCCAATACAGCCCGTTGAACATATCGCTACCGATATGCTGCCTCA
AGAACCGGTAACCAGACCCGAACCGATACCAATGAGTGCTTCTGCACAAGTCGCGTCGCCGTACTTTAATACGGATGGCA
CCATTCGACCGATGTGGAAGGTGGAACGGGAAGCAATTCAAAATGCGATAGCCTACTGCGATGGTAACGTACTCAACGCC
GCGGTAATGTTAGAGCTGAGTCCATCTACTGTTTATCGTAAAAAACAAGCGTGGGAAGCGGATGAGGCTAATCTCGAACA
ATCGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484