Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZW92_RS00325 Genome accession   NZ_CP080235
Coordinates   74866..75495 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O139:H1 strain W13-16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 69866..80495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW92_RS00305 (KZW92_00305) ycbZ 70255..72015 (-) 1761 WP_063085344.1 Lon protease family protein -
  KZW92_RS00310 (KZW92_00310) matP 72201..72653 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZW92_RS00315 (KZW92_00315) ompA 72729..73781 (-) 1053 WP_000750418.1 porin OmpA -
  KZW92_RS00320 (KZW92_00320) sulA 74138..74647 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  KZW92_RS00325 (KZW92_00325) sxy/tfoX 74866..75495 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZW92_RS00330 (KZW92_00330) yccS 75458..77620 (-) 2163 WP_000875041.1 YccS family putative transporter -
  KZW92_RS00335 (KZW92_00335) yccF 77630..78076 (-) 447 WP_063085343.1 YccF domain-containing protein -
  KZW92_RS00340 (KZW92_00340) helD 78199..80253 (+) 2055 WP_063085342.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591529 KZW92_RS00325 WP_000839153.1 74866..75495(+) (sxy/tfoX) [Escherichia coli O139:H1 strain W13-16]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591529 KZW92_RS00325 WP_000839153.1 74866..75495(+) (sxy/tfoX) [Escherichia coli O139:H1 strain W13-16]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1