Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZW90_RS09155 Genome accession   NZ_CP080233
Coordinates   1918860..1919489 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O139:H1 strain P15-25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1913860..1924489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW90_RS09135 (KZW90_09135) ycbZ 1914249..1916009 (-) 1761 WP_063085344.1 Lon protease family protein -
  KZW90_RS09140 (KZW90_09140) matP 1916195..1916647 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZW90_RS09145 (KZW90_09145) ompA 1916723..1917775 (-) 1053 WP_000750418.1 porin OmpA -
  KZW90_RS09150 (KZW90_09150) sulA 1918132..1918641 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  KZW90_RS09155 (KZW90_09155) sxy/tfoX 1918860..1919489 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZW90_RS09160 (KZW90_09160) yccS 1919452..1921614 (-) 2163 WP_000875041.1 YccS family putative transporter -
  KZW90_RS09165 (KZW90_09165) yccF 1921624..1922070 (-) 447 WP_063085343.1 YccF domain-containing protein -
  KZW90_RS09170 (KZW90_09170) helD 1922193..1924247 (+) 2055 WP_063085342.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591515 KZW90_RS09155 WP_000839153.1 1918860..1919489(+) (sxy/tfoX) [Escherichia coli O139:H1 strain P15-25]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591515 KZW90_RS09155 WP_000839153.1 1918860..1919489(+) (sxy/tfoX) [Escherichia coli O139:H1 strain P15-25]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1