Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZW89_RS15630 Genome accession   NZ_CP080223
Coordinates   3093100..3093729 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O141:H4 strain P13-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088100..3098729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW89_RS15615 (KZW89_15615) helD 3088342..3090396 (-) 2055 WP_001295354.1 DNA helicase IV -
  KZW89_RS15620 (KZW89_15620) yccF 3090519..3090965 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KZW89_RS15625 (KZW89_15625) yccS 3090975..3093137 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KZW89_RS15630 (KZW89_15630) sxy/tfoX 3093100..3093729 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZW89_RS15635 (KZW89_15635) sulA 3093948..3094457 (+) 510 WP_000288713.1 SOS-induced cell division inhibitor SulA -
  KZW89_RS15640 (KZW89_15640) ompA 3094814..3095854 (+) 1041 WP_000750416.1 porin OmpA -
  KZW89_RS15645 (KZW89_15645) matP 3095930..3096382 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZW89_RS15650 (KZW89_15650) ycbZ 3096568..3098328 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591498 KZW89_RS15630 WP_000839153.1 3093100..3093729(-) (sxy/tfoX) [Escherichia coli O141:H4 strain P13-6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591498 KZW89_RS15630 WP_000839153.1 3093100..3093729(-) (sxy/tfoX) [Escherichia coli O141:H4 strain P13-6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1