Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZY06_RS10060 Genome accession   NZ_CP080146
Coordinates   2081513..2082142 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PK8276     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076513..2087142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY06_RS10045 (KZY06_10045) helD 2076755..2078809 (-) 2055 WP_219808269.1 DNA helicase IV -
  KZY06_RS10050 (KZY06_10050) yccF 2078932..2079378 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KZY06_RS10055 (KZY06_10055) yccS 2079388..2081550 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KZY06_RS10060 (KZY06_10060) sxy/tfoX 2081513..2082142 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZY06_RS10065 (KZY06_10065) sulA 2082361..2082870 (+) 510 WP_000288720.1 SOS-induced cell division inhibitor SulA -
  KZY06_RS10070 (KZY06_10070) ompA 2083227..2084267 (+) 1041 WP_000750416.1 porin OmpA -
  KZY06_RS10075 (KZY06_10075) matP 2084343..2084795 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZY06_RS10080 (KZY06_10080) ycbZ 2084981..2086741 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591357 KZY06_RS10060 WP_000839153.1 2081513..2082142(-) (sxy/tfoX) [Escherichia coli strain PK8276]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591357 KZY06_RS10060 WP_000839153.1 2081513..2082142(-) (sxy/tfoX) [Escherichia coli strain PK8276]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1