Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M2J78_RS01850 Genome accession   NZ_CP096912
Coordinates   400566..401909 (+) Length   447 a.a.
NCBI ID   WP_023088751.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY7770     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395566..406909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J78_RS01830 (M2J78_01830) - 396403..396969 (-) 567 WP_003084491.1 hypothetical protein -
  M2J78_RS01835 (M2J78_01835) rsmD 396972..397568 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M2J78_RS01840 (M2J78_01840) - 397568..399055 (-) 1488 WP_023100747.1 M16 family metallopeptidase -
  M2J78_RS01845 (M2J78_01845) - 399048..400445 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  M2J78_RS01850 (M2J78_01850) pilA 400566..401909 (+) 1344 WP_023088751.1 signal recognition particle-docking protein FtsY Machinery gene
  M2J78_RS01855 (M2J78_01855) ftsE 401906..402577 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  M2J78_RS01860 (M2J78_01860) ftsX 402577..403584 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  M2J78_RS01865 (M2J78_01865) rpoH 403698..404552 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  M2J78_RS01870 (M2J78_01870) - 404617..405222 (+) 606 WP_003084511.1 hypothetical protein -
  M2J78_RS01875 (M2J78_01875) mtgA 405227..405958 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  M2J78_RS01880 (M2J78_01880) - 405995..406372 (+) 378 WP_021263126.1 DUF423 domain-containing protein -
  M2J78_RS01885 (M2J78_01885) thiS 406475..406675 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 47486.89 Da        Isoelectric Point: 4.6393

>NTDB_id=591352 M2J78_RS01850 WP_023088751.1 400566..401909(+) (pilA) [Pseudomonas aeruginosa strain NY7770]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGM
ASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE
PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAK
ARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTA
KGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=591352 M2J78_RS01850 WP_023088751.1 400566..401909(+) (pilA) [Pseudomonas aeruginosa strain NY7770]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCG
AGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATG
GCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGT
CGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGC
TGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAG
CCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACT
CGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGC
GCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAG
GCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAA
GGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGA
ACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCC
AAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGA
TCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(157-222)

SRP54-type protein, GTPase domain (SRP54)

(242-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.786

95.973

0.459