Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZY05_RS02835 Genome accession   NZ_CP080139
Coordinates   577028..577657 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PK8241     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 572028..582657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY05_RS02815 (KZY05_02815) ycbZ 572417..574177 (-) 1761 WP_000156518.1 AAA family ATPase -
  KZY05_RS02820 (KZY05_02820) matP 574363..574815 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZY05_RS02825 (KZY05_02825) ompA 574891..575943 (-) 1053 WP_032202393.1 porin OmpA -
  KZY05_RS02830 (KZY05_02830) sulA 576300..576809 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  KZY05_RS02835 (KZY05_02835) sxy/tfoX 577028..577657 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZY05_RS02840 (KZY05_02840) yccS 577620..579782 (-) 2163 WP_000875061.1 YccS family putative transporter -
  KZY05_RS02845 (KZY05_02845) yccF 579792..580238 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KZY05_RS02850 (KZY05_02850) helD 580361..582415 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591323 KZY05_RS02835 WP_000839153.1 577028..577657(+) (sxy/tfoX) [Escherichia coli strain PK8241]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591323 KZY05_RS02835 WP_000839153.1 577028..577657(+) (sxy/tfoX) [Escherichia coli strain PK8241]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1