Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZY04_RS13835 Genome accession   NZ_CP080133
Coordinates   2832148..2832777 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PK8277     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2827148..2837777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY04_RS13820 (KZY04_13825) helD 2827390..2829444 (-) 2055 WP_074524244.1 DNA helicase IV -
  KZY04_RS13825 (KZY04_13830) yccF 2829567..2830013 (+) 447 WP_112928673.1 YccF domain-containing protein -
  KZY04_RS13830 (KZY04_13835) yccS 2830023..2832185 (+) 2163 WP_219794943.1 YccS family putative transporter -
  KZY04_RS13835 (KZY04_13840) sxy/tfoX 2832148..2832777 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZY04_RS13840 (KZY04_13845) sulA 2832996..2833505 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KZY04_RS13845 (KZY04_13850) ompA 2833862..2834902 (+) 1041 WP_000750416.1 porin OmpA -
  KZY04_RS13850 (KZY04_13855) matP 2834978..2835430 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZY04_RS13855 (KZY04_13860) ycbZ 2835616..2837376 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591314 KZY04_RS13835 WP_000839153.1 2832148..2832777(-) (sxy/tfoX) [Escherichia coli strain PK8277]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591314 KZY04_RS13835 WP_000839153.1 2832148..2832777(-) (sxy/tfoX) [Escherichia coli strain PK8277]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1