Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MSA_RS07040 Genome accession   NC_021486
Coordinates   1329999..1331816 (-) Length   605 a.a.
NCBI ID   WP_016480959.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324999..1336816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS07020 (MSA_14480) - 1325604..1326833 (-) 1230 WP_016480957.1 HAMP domain-containing sensor histidine kinase -
  MSA_RS07025 (MSA_14490) - 1326833..1327519 (-) 687 WP_001264419.1 response regulator transcription factor -
  MSA_RS07030 (MSA_14500) - 1327521..1328147 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  MSA_RS07035 (MSA_14510) rcrQ 1328255..1330009 (-) 1755 WP_016480958.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07040 (MSA_14520) rcrP 1329999..1331816 (-) 1818 WP_016480959.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07045 (MSA_14530) - 1331863..1332303 (-) 441 WP_016480960.1 MarR family transcriptional regulator -
  MSA_RS07050 (MSA_14540) - 1332572..1334644 (+) 2073 WP_016480961.1 bifunctional metallophosphatase/5'-nucleotidase -
  MSA_RS07055 (MSA_14550) - 1334681..1335091 (-) 411 WP_000594936.1 peptide deformylase -
  MSA_RS07060 (MSA_14560) gdhA 1335161..1336510 (-) 1350 WP_016480962.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67519.26 Da        Isoelectric Point: 6.9866

>NTDB_id=59130 MSA_RS07040 WP_016480959.1 1329999..1331816(-) (rcrP) [Streptococcus agalactiae ILRI005]
MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVGFLGA
RTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGA
VGVAVIIVMILFSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIM
PRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLI
NLVPRFYDATEGAIKLDGIDIKEYSHNDLNNKIGYIPQKAVLFSGTVRSNMIFGESGREELSDEQIWQALELAQAKEFIE
AKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHELKEKTAAMTKLIVAQRISTIMD
ADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=59130 MSA_RS07040 WP_016480959.1 1329999..1331816(-) (rcrP) [Streptococcus agalactiae ILRI005]
ATGTTTAATATTTTCAAGCGACTCAATGGTAAAGAATGGTTGATGATTGTGGCGAGTACTATATTAGTGTGTCTAGCGGT
TTGGATGGACCTAAAGACTCCAGAATATATGTCTGATATCACACGTATGTTGCAAACTAAAGGTACAAAGTTAGAGGCTC
TTTGGGATCCTGGACTAAAAATGCTTGCCTTTTCATTTGGTAGTTTTTTAGTAGCAGTAATGGTAGGTTTTTTAGGTGCT
AGGACAGCAGCTAGTTTTACTAGTCGATTACGTTCAGATATTTTTAACCATGTGATGGATTATTCTGATGCAGAAATTAA
GCGATTTTCTATCCCCTCTCTATTAACGCGCACAACTAACGACTTGACTCAGCTACAGATCCTTATTGTAATGGGAATGC
AGGTTGTTACTCGTGGACCAATTATGGCAATATGGGCTTTGACTAAAATTTGGGGTAAAAGCGATCAATGGACTGGGGCA
GTTGGAGTAGCAGTTATTATCGTTATGATATTATTTAGCGTTCTACTCTTACTCGCTTTTCCGAGACAACGTCAAATCCA
AGGTTTTACAGATGCGCTTAATGCAACTACTAGAGAGGCACTCTCTGGTGTTAGAGTTATCCGTGCCTACAATGCTGAAA
AGTATCAAACAGATAAGTTCAAACGTGAAAATGACGATTTAACAAAATTGAACCTTTTTGTTTATAGATTGATGTCGCTT
ATGAATCCTGTGATGACAGTGGTTTCATCTGGATTGACTTTAGCTATTTATTGGATTGGCTCTTATTTGATTAATGATAT
TTCTGTGCCTAAAGTTACAGGAACAAGTGTATCTGTATTGGCTGCTAAATCAGCTATCACTGATCGAGTGGATCTTTTTT
CAAACATGGTTGTTTTTTCATCTTATGCTATGCAAGTTGTTATGGGATTTATGATGATGGTAGCTATTTTTATCATCATG
CCTCGTGCTTTAGTATCGGCTAGACGTATTAATGAGGTACTAACTTTAGCCCCAACAGTAACTTTTAAAGAAAATAGTCA
TATTCAAAGTGCACAAAAAGGTCAAATTGAGTTTCAAGATGTGTCATTTCATTATAGTAAAGATTCTGAAGCGGTTATTG
AACATGTATCTTTCAAAGCAGATACTGGTCAGACGGTGGCATTTATTGGGTCTACAGGTTCTGGAAAATCCACTTTAATC
AATTTAGTTCCACGTTTTTATGACGCCACAGAGGGGGCAATTAAACTTGATGGCATTGATATAAAGGAATACTCTCACAA
TGATTTGAATAATAAAATTGGCTATATTCCACAGAAAGCTGTTCTCTTTAGTGGGACAGTACGTTCTAATATGATTTTTG
GAGAGAGTGGCAGGGAGGAACTTAGTGATGAACAAATTTGGCAAGCACTCGAATTAGCGCAAGCTAAAGAATTTATCGAA
GCTAAAGAAAAAGGATTAGATACAGAAGTCGCTCAAGGTGGTAGTAACTTTTCAGGAGGACAAAAACAACGCTTGGCAAT
CGCACGTGCTTTAGCACGTCACCCTGAAATTCTCATTTTTGATGACTCATTTTCAGCGTTAGATTATAAAACAGATCATA
TTTTACGCCATGAGCTGAAAGAAAAAACAGCTGCTATGACGAAATTAATTGTCGCTCAACGCATTTCAACTATCATGGAT
GCTGATCTCATTTTAGTGCTAGATCAAGGTAAGGTTGTTGGGCAAGGAACACATAAGGAATTGTTATCAAATAATGAAGT
GTATCAAGAGATAGCCTATTCTCAATTGTCTAAGGAGGAATTGGAAAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(374-523)

ABC transporter transmembrane region (ABC_membrane)

(58-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

77.944

99.669

0.777

Multiple sequence alignment