Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MSA_RS07035 Genome accession   NC_021486
Coordinates   1328255..1330009 (-) Length   584 a.a.
NCBI ID   WP_016480958.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323255..1335009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS07010 (MSA_14460) mvaD 1323684..1324628 (-) 945 WP_000348818.1 diphosphomevalonate decarboxylase -
  MSA_RS07015 (MSA_14470) mvk 1324610..1325488 (-) 879 WP_000659719.1 mevalonate kinase -
  MSA_RS07020 (MSA_14480) - 1325604..1326833 (-) 1230 WP_016480957.1 HAMP domain-containing sensor histidine kinase -
  MSA_RS07025 (MSA_14490) - 1326833..1327519 (-) 687 WP_001264419.1 response regulator transcription factor -
  MSA_RS07030 (MSA_14500) - 1327521..1328147 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  MSA_RS07035 (MSA_14510) rcrQ 1328255..1330009 (-) 1755 WP_016480958.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07040 (MSA_14520) rcrP 1329999..1331816 (-) 1818 WP_016480959.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07045 (MSA_14530) - 1331863..1332303 (-) 441 WP_016480960.1 MarR family transcriptional regulator -
  MSA_RS07050 (MSA_14540) - 1332572..1334644 (+) 2073 WP_016480961.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64362.66 Da        Isoelectric Point: 7.1819

>NTDB_id=59129 MSA_RS07035 WP_016480958.1 1328255..1330009(-) (rcrQ) [Streptococcus agalactiae ILRI005]
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLG
ALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLIGSLI
MMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFKKQQVNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLH
SSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGCV
FEFLNETSMQEDKPKVLNLPKFKGHVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNS
GSISIDDINIQDMKRSQVHDAFSMVLQDTWLFEGTIKENLIFNQTTISDDEVQEAAKAVGVHHFIMTLPKGYDTVLDDAV
TLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQ
GNHDVLMSQSGFYADLYNSQFESA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=59129 MSA_RS07035 WP_016480958.1 1328255..1330009(-) (rcrQ) [Streptococcus agalactiae ILRI005]
ATGAAAACTAAATCACAAAAAACGTCTTTTTTCTCTAATTTGTCTCCGTACCTCAAAGGTTACAAACTTCTTTTTGCGTT
AGCAATTGTGTTAGCAACTTTATCAAGCTTGACAACAGTTATAGGACCAGACCGTCTTAAAGAGATGACGGATCTTATGG
TAAAAGGCTTGGCTGGTAATATTGACTTAGCCAAAATCGGTCATATTGCAGGGCAATTGGCAGTATTATATGTTTTAGGT
GCATTAGTATCCTATCTAGCAAGTTTTATTGTGACGACTATTATTCAAAAATTTGCTCAAGGTATGCGCAATGCTATTGC
TGATAAAATCAATAAAATACCTTTGAGTTATTTTGATAGCCATACTCAAGGTGATACTTTATCTCGTGTTACAAATGATG
TGGATTTGATGACACAGTCTTTTAACCAAAGTTTAGTTACTATGGTTGCATCTACAGTGTTATTGATTGGTTCATTAATT
ATGATGTTCAAAACAGATTGGCATTTAGCAACAACGGCGATTATATCGGTATTTTCAGGATTCGCTCTTTCTTCAATCAT
TATGGTGAAGAGTCAGCCTTTATTTAAAAAGCAACAGGTGAATTTGGCTAATATATCTGGATATGTAGAAGAAATTTACT
CAGGACACAACATTGTTACTAGTCATAATGCAAGACAGCAGGCTAAGTCAGATTTTCAACTATTAAATGATAAACTTCAC
AGTTCCATGTGGAAATCACAATTTTTCTCTGGAATTATGATGCCTCTGATGCAGTTTATTGGTAATTTTGGTTATGTGAT
GGTGTGTGTGGTTGGTGCCATGTTAGCTATCAAAGGAACAATTACTATGGGTACAATTGTTGCTTTTATGACCTATGTTC
GTATTTTTACACAGCCTATTGGTCAGATTGCTCAAGGAATTACACAATTACAGTCTGCTAGTGCAGCCATGGGATGTGTT
TTTGAATTTTTAAATGAAACAAGTATGCAAGAGGATAAGCCCAAAGTGTTAAATCTTCCTAAGTTTAAGGGGCATGTGTC
CTTTGAACATGTCAAGTTTGGTTATAGTGATAACAAGACTATTATTCATGACTTTACTTCGGAGGCACAGCCTGGTCAGA
AAGTTGCTATTGTAGGACCAACTGGCGCAGGTAAAACGACAATTGTTAATTTATTGATGCGTTTTTATGATGTTAATTCA
GGTAGTATTTCCATAGATGACATCAATATCCAAGACATGAAACGTAGTCAAGTTCATGATGCTTTCTCGATGGTTCTTCA
AGATACATGGTTGTTTGAGGGAACTATTAAAGAAAATTTGATTTTTAATCAGACGACAATCAGTGATGATGAGGTTCAAG
AAGCTGCTAAGGCAGTCGGTGTACATCATTTTATAATGACACTACCTAAAGGGTATGATACTGTCCTTGATGACGCTGTG
ACATTGTCAGTTGGACAAAAGCAATTATTAACCATTGCTCGAGCTCTTTTGAAAAATTCTCCCTTACTTATCTTAGATGA
AGCAACTTCATCTGTTGATACACGTACAGAAGAGTTAATTCAAAAAGCTATGGACAAACTTATGGAAGGAAGAACATCAT
TTGTTATCGCACATCGTTTATCAACGATTAAAAACGCAGATTTGATTTTGGTCATGAAAGATGGGAATATCATTGAGCAA
GGCAATCATGATGTTTTGATGTCTCAAAGTGGTTTTTATGCTGATCTGTATAATTCTCAATTCGAATCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-510)

ABC transporter transmembrane region (ABC_membrane)

(26-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

75.952

98.973

0.752

Multiple sequence alignment