Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M2J77_RS13035 Genome accession   NZ_CP096909
Coordinates   2753467..2754063 (+) Length   198 a.a.
NCBI ID   WP_039843171.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY8688     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2748467..2759063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J77_RS13010 (M2J77_12990) - 2749413..2749790 (+) 378 WP_003083354.1 hypothetical protein -
  M2J77_RS13020 (M2J77_13000) - 2750044..2750910 (-) 867 WP_003122917.1 substrate-binding periplasmic protein -
  M2J77_RS13025 (M2J77_13005) dnaX 2750947..2753016 (+) 2070 WP_033986747.1 DNA polymerase III subunit gamma/tau -
  M2J77_RS13030 (M2J77_13010) - 2753062..2753388 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  M2J77_RS13035 (M2J77_13015) recR 2753467..2754063 (+) 597 WP_039843171.1 recombination mediator RecR Machinery gene
  M2J77_RS13040 (M2J77_13020) - 2754186..2755334 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  M2J77_RS13045 (M2J77_13025) - 2755347..2755886 (-) 540 WP_003103931.1 CbrC family protein -
  M2J77_RS13050 (M2J77_13030) - 2755960..2756847 (-) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  M2J77_RS13055 (M2J77_13035) - 2756844..2758427 (-) 1584 WP_003121915.1 flavin-containing monooxygenase -
  M2J77_RS13060 (M2J77_13040) - 2758550..2758717 (+) 168 Protein_2581 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21163.39 Da        Isoelectric Point: 6.0063

>NTDB_id=591283 M2J77_RS13035 WP_039843171.1 2753467..2754063(+) (recR) [Pseudomonas aeruginosa strain NY8688]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRSIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=591283 M2J77_RS13035 WP_039843171.1 2753467..2754063(+) (recR) [Pseudomonas aeruginosa strain NY8688]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGTCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

47.98

100

0.48