Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZO72_RS13390 Genome accession   NZ_CP080121
Coordinates   2741431..2742060 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PK8217     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2736431..2747060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO72_RS13375 (KZO72_13385) helD 2736673..2738727 (-) 2055 WP_074524244.1 DNA helicase IV -
  KZO72_RS13380 (KZO72_13390) yccF 2738850..2739296 (+) 447 WP_112928673.1 YccF domain-containing protein -
  KZO72_RS13385 (KZO72_13395) yccS 2739306..2741468 (+) 2163 WP_219794943.1 YccS family putative transporter -
  KZO72_RS13390 (KZO72_13400) sxy/tfoX 2741431..2742060 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZO72_RS13395 (KZO72_13405) sulA 2742279..2742788 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KZO72_RS13400 (KZO72_13410) ompA 2743145..2744185 (+) 1041 WP_000750416.1 porin OmpA -
  KZO72_RS13405 (KZO72_13415) matP 2744261..2744713 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZO72_RS13410 (KZO72_13420) ycbZ 2744899..2746659 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=591271 KZO72_RS13390 WP_000839153.1 2741431..2742060(-) (sxy/tfoX) [Escherichia coli strain PK8217]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=591271 KZO72_RS13390 WP_000839153.1 2741431..2742060(-) (sxy/tfoX) [Escherichia coli strain PK8217]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1