Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MSA_RS05510 Genome accession   NC_021486
Coordinates   1024718..1025680 (-) Length   320 a.a.
NCBI ID   WP_000735583.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019718..1030680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS05490 (MSA_11270) dprA 1020900..1021742 (-) 843 WP_001015247.1 DNA-processing protein DprA Machinery gene
  MSA_RS05495 (MSA_11280) - 1021880..1022928 (-) 1049 Protein_995 siderophore ABC transporter substrate-binding protein -
  MSA_RS05500 (MSA_11300) - 1022989..1023750 (-) 762 WP_000614750.1 ATP-binding cassette domain-containing protein -
  MSA_RS05505 (MSA_11310) - 1023747..1024721 (-) 975 WP_016480753.1 iron chelate uptake ABC transporter family permease subunit -
  MSA_RS05510 (MSA_11320) ceuB 1024718..1025680 (-) 963 WP_000735583.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  MSA_RS05515 (MSA_11330) - 1025920..1026468 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  MSA_RS05520 (MSA_11340) - 1026489..1027250 (-) 762 WP_016480754.1 ribonuclease HII -
  MSA_RS05525 (MSA_11350) ylqF 1027237..1028088 (-) 852 WP_016480755.1 ribosome biogenesis GTPase YlqF -
  MSA_RS05530 (MSA_11360) - 1028364..1028936 (-) 573 WP_001231795.1 L,D-transpeptidase -
  MSA_RS05535 (MSA_11370) - 1029136..1030620 (-) 1485 WP_016480756.1 carbon starvation CstA family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34864.98 Da        Isoelectric Point: 8.4842

>NTDB_id=59127 MSA_RS05510 WP_000735583.1 1024718..1025680(-) (ceuB) [Streptococcus agalactiae ILRI005]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISLTKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=59127 MSA_RS05510 WP_000735583.1 1024718..1025680(-) (ceuB) [Streptococcus agalactiae ILRI005]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTATCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATTGCTTCAGGTTTTGCCATTTTAGGATCGCTGCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCTTAACTAAAGGGGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.276

99.688

0.481

Multiple sequence alignment