Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   MSA_RS04940 Genome accession   NC_021486
Coordinates   893178..894035 (+) Length   285 a.a.
NCBI ID   WP_016480695.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 888178..899035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS04910 (MSA_10090) - 888494..889375 (+) 882 WP_000919083.1 F0F1 ATP synthase subunit gamma -
  MSA_RS04915 (MSA_10100) atpD 889449..890855 (+) 1407 WP_000094375.1 F0F1 ATP synthase subunit beta -
  MSA_RS04920 (MSA_10110) - 890868..891281 (+) 414 WP_000068053.1 F0F1 ATP synthase subunit epsilon -
  MSA_RS04925 (MSA_10120) - 891346..891576 (+) 231 WP_000602601.1 DUF1146 family protein -
  MSA_RS04930 (MSA_10130) murA 891639..892910 (+) 1272 WP_000357877.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MSA_RS04935 (MSA_10140) - 892912..893103 (+) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  MSA_RS04940 (MSA_10150) endA 893178..894035 (+) 858 WP_016480695.1 DNA/RNA non-specific endonuclease Machinery gene
  MSA_RS04945 (MSA_10160) pheS 894326..895366 (+) 1041 WP_000365655.1 phenylalanine--tRNA ligase subunit alpha -
  MSA_RS04950 (MSA_10170) - 895449..895970 (+) 522 WP_000078401.1 GNAT family N-acetyltransferase -
  MSA_RS04955 (MSA_10180) pheT 896023..898428 (+) 2406 WP_016480696.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31392.45 Da        Isoelectric Point: 10.4835

>NTDB_id=59123 MSA_RS04940 WP_016480695.1 893178..894035(+) (endA) [Streptococcus agalactiae ILRI005]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNISGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALIGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQIK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=59123 MSA_RS04940 WP_016480695.1 893178..894035(+) (endA) [Streptococcus agalactiae ILRI005]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATATATCAGGAACCCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGTCATTTAATTGGTTATGCTTTAATAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCCCATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGATAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.544

80

0.54
  endA Streptococcus pneumoniae D39

67.544

80

0.54
  endA Streptococcus pneumoniae R6

67.544

80

0.54
  endA Streptococcus pneumoniae TIGR4

67.544

80

0.54

Multiple sequence alignment