Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   MSA_RS04200 Genome accession   NC_021486
Coordinates   741100..741909 (+) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae ILRI005     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 736100..746909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS04175 (MSA_8580) - 736428..737123 (-) 696 WP_016480609.1 amino acid ABC transporter permease -
  MSA_RS04180 (MSA_8590) - 737136..737894 (-) 759 WP_049810810.1 transporter substrate-binding domain-containing protein -
  MSA_RS04185 (MSA_8600) - 737949..738704 (-) 756 WP_016480611.1 amino acid ABC transporter ATP-binding protein -
  MSA_RS04190 (MSA_8610) vicR 739044..739754 (+) 711 WP_000722052.1 response regulator YycF Regulator
  MSA_RS04195 (MSA_8620) vicK 739747..741096 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  MSA_RS04200 (MSA_8630) vicX 741100..741909 (+) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  MSA_RS04205 (MSA_8640) - 741912..742280 (+) 369 WP_000719384.1 YbaN family protein -
  MSA_RS04210 (MSA_8650) rnc 742456..743142 (+) 687 WP_000661526.1 ribonuclease III -
  MSA_RS04215 (MSA_8660) smc 743150..746689 (+) 3540 WP_016480612.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=59117 MSA_RS04200 WP_001289498.1 741100..741909(+) (vicX) [Streptococcus agalactiae ILRI005]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=59117 MSA_RS04200 WP_001289498.1 741100..741909(+) (vicX) [Streptococcus agalactiae ILRI005]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment