Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MUK60_RS04015 Genome accession   NZ_CP096907
Coordinates   886515..887537 (-) Length   340 a.a.
NCBI ID   WP_248775724.1    Uniprot ID   -
Organism   Streptomyces sp. LRE541     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 881515..892537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK60_RS03995 (MUK60_03995) - 881999..883951 (+) 1953 WP_248775720.1 glycoside hydrolase family 9 protein -
  MUK60_RS04000 (MUK60_04000) - 883996..884865 (+) 870 WP_248775721.1 class I SAM-dependent methyltransferase -
  MUK60_RS04005 (MUK60_04005) - 884919..885641 (-) 723 WP_248775722.1 hypothetical protein -
  MUK60_RS04010 (MUK60_04010) - 885638..886333 (-) 696 WP_248775723.1 hypothetical protein -
  MUK60_RS04015 (MUK60_04015) cytR 886515..887537 (-) 1023 WP_248775724.1 LacI family DNA-binding transcriptional regulator Regulator
  MUK60_RS04020 (MUK60_04020) - 887895..889262 (+) 1368 WP_248775725.1 extracellular solute-binding protein -
  MUK60_RS04025 (MUK60_04025) - 889364..890272 (+) 909 WP_248775726.1 sugar ABC transporter permease -
  MUK60_RS04030 (MUK60_04030) - 890275..891162 (+) 888 WP_248775727.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36524.67 Da        Isoelectric Point: 5.9648

>NTDB_id=591163 MUK60_RS04015 WP_248775724.1 886515..887537(-) (cytR) [Streptomyces sp. LRE541]
MAGARLKDVAERAGVSIKTVSNVVRGEVRVAEQTRQRVLRAIAELDYQPNASARHLRTGRSGIIALAVPELVAPYFAELA
AEVIAAAKKRGCTVLIEDTGGDPAEELRIACGLSDPLIDGVLLSPLCLDETMLANRERRVPLVLLGEQSYKIPADHVLID
NSAAAREATEHLLQLGRRRIGVIGQPSDRAHATTVQRMHGFLTALHAAGVPHDPRLVPDTGEFTRADGAAAMRILLALDD
PPDAVFCFSDLLASGAVRAAHEHGLRVPQDLAVVGFDDIQETRYSVPTLTTVSPDKREIAELAVDAVLHRITTDAEAPHS
RLIAGYELVVRESTRTAEAG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=591163 MUK60_RS04015 WP_248775724.1 886515..887537(-) (cytR) [Streptomyces sp. LRE541]
ATGGCAGGTGCACGCCTCAAGGATGTCGCCGAGCGCGCGGGCGTATCGATCAAGACCGTCTCGAACGTCGTCCGGGGCGA
GGTCCGGGTCGCGGAACAGACCCGGCAACGGGTGCTGCGCGCCATAGCCGAACTCGACTACCAGCCCAACGCCTCCGCAC
GCCATCTGCGCACGGGCCGCAGCGGCATCATCGCGCTGGCCGTGCCCGAACTGGTCGCCCCGTACTTCGCGGAACTCGCC
GCCGAGGTCATCGCGGCCGCCAAGAAGCGCGGCTGCACGGTCCTCATCGAGGACACCGGGGGAGACCCCGCGGAGGAACT
GCGCATCGCCTGCGGGCTCAGCGACCCGCTCATCGACGGTGTGCTGCTCAGCCCGCTCTGCCTCGACGAGACGATGCTCG
CCAACCGCGAGCGCCGAGTGCCCCTCGTCCTGCTCGGCGAGCAGTCGTACAAGATCCCGGCCGACCACGTACTGATCGAC
AACTCCGCGGCGGCGCGCGAGGCGACCGAGCACCTGCTCCAGCTCGGCCGGCGGCGCATCGGAGTCATCGGCCAGCCCTC
GGACCGGGCCCATGCCACGACGGTGCAGCGCATGCACGGCTTCCTGACCGCACTGCACGCCGCCGGTGTGCCGCACGACC
CCCGACTCGTCCCGGACACGGGGGAGTTCACCCGGGCCGACGGAGCCGCCGCCATGCGGATCCTGCTCGCCCTGGACGAC
CCTCCGGACGCGGTCTTCTGCTTCAGTGACCTGCTCGCCTCCGGCGCGGTGCGCGCGGCGCACGAACACGGTCTGCGGGT
GCCGCAGGACCTGGCGGTCGTGGGCTTCGACGACATCCAGGAGACCCGCTACAGCGTCCCGACGCTGACCACCGTGTCAC
CGGACAAGCGGGAGATCGCCGAACTGGCCGTGGACGCCGTGCTGCACAGGATCACCACCGACGCGGAAGCCCCTCACTCG
CGGCTCATCGCGGGCTACGAGCTGGTCGTACGGGAGAGCACGCGAACGGCGGAGGCGGGGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-334)

Bacterial regulatory proteins, lacI family (LacI)

(6-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

39.157

97.647

0.382
  cytR Vibrio parahaemolyticus RIMD 2210633

38.554

97.647

0.376